Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00253 ATGGCTGCTGATCCTCTGACAAGCTCGAATGGAAATGCCAATGTAAATGCACCACCTAATCCGCGAAGGACTTATCAAGTCGTTGTAGCTGCTACTGAAAATATGGGTATTGGTAAGGATGGGAAACTTCCATGGAGGTTGCCTTCTGATCTCAAATTTTTTAAGAACATAACCACGACAACATCAGATCATGGGAAAAGGAATGCAGTTCTAATGGGTCGTAAAACATGGGAGAGTATTCCGGCTGAGTATCGACCTCTACCTGGTCGTCTCAATGTTGTTCTGACTCGTTCTGGAAGTTTCGACATTGCCACTGTCGAAAATGTTATAATATGTGGTAGTATGACGTCTGCTTTGGAATTATTAGCAGCTTCGCCTTACTGTTTGTCAATAGAGAAAGTGTTTGTTATAGGTGGTGGTGAGATATTAAGGGAAGCTCTGAATGCCCCCGAGTGTGATGCGGTCCACGTTACTGAAATCGAGACAAACGTTGAATGCGACACCTTCATACCAGCTATTGACAAGTCTATGTTTCAGCCATGGTACTCATCCTTTCCCGTGGTGGAAAATAACTTACGATATTCGTTCACTAGTTATGTTCGTGTGAGGAGCTCAACCGAACCACCACCCATTGATCAGAACAATGGTCTGGTCTCTCATAACAAACCCGATTCTTTTAACTTCGAAGCTAAGAACTTCTCTTTCCTACCCAAGGAGATTTTTGAGAGGCACGAGGAGTACTTGTACCTAAAACTTGTTCAAGAAATCATCTCAGACGGTACTTCCAAGGATGATAGAACGGGAACGGGTACTTTATCAAAATTTGGTTGCCAGATGCGGTACAACTTGCGCAAAACTTTTCCGCTGCTTACAACTAAGGCATGTGCTCGTTTCGTATTTTGTATTGGTTTAAGAGAAAGGGAGGAAGGCGACTTGGGACCCGTATACGGGTTTCAGTGGCGACACTTCGGTGCTAGGTATACTGACATGCATGCTGACTACACTGGTCAAGGATTTGATCAGTTGCTAGATGTTATTAACAAGATAAAAAATAATCCCGATGATCGGAGGATCGTTCTTTCTGCGTGGAATCCATCTGATCTCAAACTGATGGCACTCCCGCCTTGCCACATGTTCGCTCAGTTTTATGTAGCGAACGGGGAGTTATCGTGTCAAATGTACCAGCGCTCTGCTGATATGGGCCTTGATCTTGCTTACGGAGACTTCATACATGTGATCGGAGACGCTCATGTTTACCGTACTCACGTGCGGCCATTGCAGGAACAGCTTCAGAAACTCCCGAAACCGTTCCCTGTTTTGAAAATAAACCCCGAGAAGAAGGATATCGATTCGTTAGTGGCAGCTGATTTCGAGCTAACAGGTTATGACCCTCATGAGAAGATAGCAATGAAAATGGCAGTATAG 1425 44.28 MAADPLTSSNGNANVNAPPNPRRTYQVVVAATENMGIGKDGKLPWRLPSDLKFFKNITTTTSDHGKRNAVLMGRKTWESIPAEYRPLPGRLNVVLTRSGSFDIATVENVIICGSMTSALELLAASPYCLSIEKVFVIGGGEILREALNAPECDAVHVTEIETNVECDTFIPAIDKSMFQPWYSSFPVVENNLRYSFTSYVRVRSSTEPPPIDQNNGLVSHNKPDSFNFEAKNFSFLPKEIFERHEEYLYLKLVQEIISDGTSKDDRTGTGTLSKFGCQMRYNLRKTFPLLTTKACARFVFCIGLREREEGDLGPVYGFQWRHFGARYTDMHADYTGQGFDQLLDVINKIKNNPDDRRIVLSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLDLAYGDFIHVIGDAHVYRTHVRPLQEQLQKLPKPFPVLKINPEKKDIDSLVAADFELTGYDPHEKIAMKMAV 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4546545 4552237 - Cp4.1LG16g02580.1 Cpe16g00253 482628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00253 474 TIGRFAM thym_sym: thymidylate synthase 307 403 IPR000398 GO:0004799|GO:0006231
Cpe16g00253 474 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 36 58 IPR017925 GO:0004146
Cpe16g00253 474 Gene3D Dihydrofolate Reductase, subunit A 8 203 IPR024072 -
Cpe16g00253 474 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 403 474 - -
Cpe16g00253 474 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 1 294 - -
Cpe16g00253 474 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 295 404 - -
Cpe16g00253 474 ProSitePatterns Thymidylate synthase active site. 356 384 IPR020940 GO:0004799|GO:0006231
Cpe16g00253 474 PRINTS Thymidylate synthase family signature 345 364 IPR000398 GO:0004799|GO:0006231
Cpe16g00253 474 PRINTS Thymidylate synthase family signature 371 386 IPR000398 GO:0004799|GO:0006231
Cpe16g00253 474 PRINTS Thymidylate synthase family signature 389 415 IPR000398 GO:0004799|GO:0006231
Cpe16g00253 474 Pfam Dihydrofolate reductase 26 201 IPR001796 GO:0004146|GO:0046654
Cpe16g00253 474 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 234 298 IPR036926 -
Cpe16g00253 474 PANTHER THYMIDYLATE SYNTHASE 1 403 474 IPR045097 GO:0016741
Cpe16g00253 474 SUPERFAMILY Dihydrofolate reductase-like 20 201 IPR024072 -
Cpe16g00253 474 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 299 474 IPR036926 -
Cpe16g00253 474 CDD DHFR 28 200 IPR001796 GO:0004146|GO:0046654
Cpe16g00253 474 CDD TS_Pyrimidine_HMase 249 427 IPR023451 -
Cpe16g00253 474 PANTHER THYMIDYLATE SYNTHASE 1 1 294 IPR045097 GO:0016741
Cpe16g00253 474 PANTHER THYMIDYLATE SYNTHASE 1 295 404 IPR045097 GO:0016741
Cpe16g00253 474 Pfam Thymidylate synthase 307 405 IPR023451 -
Cpe16g00253 474 Pfam Thymidylate synthase 403 474 IPR023451 -
Cpe16g00253 474 Pfam Thymidylate synthase 249 295 IPR023451 -
Cpe16g00253 474 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 24 201 IPR001796 GO:0004146|GO:0046654
Cpe16g00253 474 MobiDBLite consensus disorder prediction 1 21 - -
Cpe16g00253 474 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 228 474 IPR036926 -
Cpe16g00253 474 PIRSF DHFR-TS 9 301 IPR012262 GO:0004146|GO:0004799|GO:0006730
Cpe16g00253 474 PIRSF DHFR-TS 402 474 IPR012262 GO:0004146|GO:0004799|GO:0006730
Cpe16g00253 474 PIRSF DHFR-TS 294 406 IPR012262 GO:0004146|GO:0004799|GO:0006730
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00253 K13998 DHFR-TS; dihydrofolate reductase / thymidylate synthase [EC:1.5.1.3 2.1.1.45] - csv:101208660 847.425
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01272 Cpe16g00253 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00253 Cpe-Chr16:4546545 Cpe05g01272 Cpe-Chr5:8864988 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g353 Blo02g00809 Blo15g00707 . . Bpe07g00421 . . Bma12g00503 . . Cma02g00385 Cma20g00837 Car02g00250 Car20g00724 . . . . . . . . . . . . . . . . . Cone12ag1160 Cone8ag1209 Cone3ag1173 Cone10ag0979 Lsi10g00386 . Chy11g00365 . . . . . . . . . Sed01g0291 Cmo02g00391 Cmo20g00846 . . . . Cpe16g00253 Cpe05g01272 Bhi10g01985 Tan05g1284 Cmetu11g0118 . . . . . . . . . . . . Csa02g01278 . Cme11g00132
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004370 2 2 3 2 2 1 1 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00253 Cpe_Chr16 FPKM 9.513032 8.927758 9.665216 10.037066 7.287816 8.895231 7.928648 16.019598 14.701344 16.568747