Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00254 ATGTTTACAGACACTCTCAATTGCGAATTTGGGAGAGTTTTAGCTATGGCGGCGGCTGCAAATCTCTACTCTCCTTCACCCTCCCTACCCAGAACCCTGAAACACTCCCTTAACTCAATCCCCATTGCCCGTGTTCCGATTCGACTTCACAAATCTTTCAAAAATCTCTCCCTAAAAGCTGTTCTTTCACAAAACCCTTCTAAAACTCAGCCTGAAACAGCCCAATTTCAGCATTGTTTCTCCAAATCCTCAGATGGGTTTCTTTACTGCGAGGGGATTAAGGTTCAGGAAGTCATGGAATCGGTTGATAAACGCCCTTTTTACCTCTACAGCAAGCCCCAGATAACTAGAAATGTTGAGGCTTACAAAGAGGCTTTGGAAGGGCTGAATTCGATCATTGGTTATGCGATTAAGGCCAATAATAATTTGAAAGTTTTGGAGCATTTGAGGAAGTTGGGTTGTGGGGCTGTGCTTGTTAGTGGAAATGAGCTTCGGTTGGCTCTTCATGCCGGTTTTGATCCCACCAGATGTATTTTTAATGGGAACGGTAAGCTTTTGGAGGATTTGGTTCTAGCTGCGGAACAAGGTGTTTTTGTGAACGTGGATAGTGAGTTTGACTTGGAAAATATTGTGGCTGCTGCAAGAATTTCTGGAAAGAAAGTTAATGTTTTACTTCGTATTAATCCGGATGTGGACCCTCAGGTACATCCTTACGTTGCCACTGGTAACAAAAACTCGAAATTCGGTATTAGAAATGAAAAGTTGCAATGGTTTCTTGATGCTGTCAAGGCACATCCCGACGAGCTTAAGCTTGTCGGGGCCCATTGCCATCTTGGTTCAACCATCACCAAGGTGGACATATTCAGAGATGCTGCAGAACTAATGGTCAACTACATTGACCAGATCAGAGATCAAGGTTTTGAAGTCAACTACCTAAACATTGGAGGTGGACTTGGGATAGATTATTATCATGCTGGTGCCGTTCTTCCTACTCCGAGAGATCTAATTAATACGGTTCGGGAGCTGGTCCTTTCACGAGATCTTAATCTAATCATTGAACCCGGGAGATCACTTATCGCCAATACTTGCTGTTTGGTTAATCGAGTTACGGGGGTAAAAACTAACGGGACGAAAAACTTCATTGTAATCGATGGAAGCATGGCTGAACTTATCCGTCCTAGTCTTTATGATGCATATCAACACATAGAGTTGGTTGCCCCAGCATCGCCTGGTGCCGAGATCTCAACTTTCGATGTGGTTGGTCCTGTCTGTGAGTCTGCAGATTTCTTAGGGAAGCAAAGGGAACTCCCAACTCCAACCAAGGGGGCTGGCTTGGTTGTCCATGATGCTGGTGCGTACTGCATGAGTATGGCATCGACTTACAATCTCAAGATGCGCCCTCCCGAGTACTGGGTTGAAGAAGATGGATCAGTGTCCAAAATCAGGCATGGCGAGTCGTTCGACGACCACCTCCGGTTCTTCGAAAATCTTTGA 1494 44.91 MFTDTLNCEFGRVLAMAAAANLYSPSPSLPRTLKHSLNSIPIARVPIRLHKSFKNLSLKAVLSQNPSKTQPETAQFQHCFSKSSDGFLYCEGIKVQEVMESVDKRPFYLYSKPQITRNVEAYKEALEGLNSIIGYAIKANNNLKVLEHLRKLGCGAVLVSGNELRLALHAGFDPTRCIFNGNGKLLEDLVLAAEQGVFVNVDSEFDLENIVAAARISGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPDELKLVGAHCHLGSTITKVDIFRDAAELMVNYIDQIRDQGFEVNYLNIGGGLGIDYYHAGAVLPTPRDLINTVRELVLSRDLNLIIEPGRSLIANTCCLVNRVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVAPASPGAEISTFDVVGPVCESADFLGKQRELPTPTKGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVEEDGSVSKIRHGESFDDHLRFFENL 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4553032 4558756 - Cp4.1LG16g02550.1 Cpe16g00254 482629

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00254 497 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 94 491 IPR009006 GO:0003824
Cpe16g00254 497 SUPERFAMILY Alanine racemase C-terminal domain-like 336 492 IPR009006 GO:0003824
Cpe16g00254 497 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 135 153 IPR000183 GO:0003824
Cpe16g00254 497 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 155 167 IPR000183 GO:0003824
Cpe16g00254 497 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 268 281 IPR000183 GO:0003824
Cpe16g00254 497 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 350 369 IPR000183 GO:0003824
Cpe16g00254 497 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 451 464 IPR000183 GO:0003824
Cpe16g00254 497 PRINTS Diaminopimelate decarboxylase signature 153 170 IPR002986 GO:0008836|GO:0009089
Cpe16g00254 497 PRINTS Diaminopimelate decarboxylase signature 241 250 IPR002986 GO:0008836|GO:0009089
Cpe16g00254 497 PRINTS Diaminopimelate decarboxylase signature 378 396 IPR002986 GO:0008836|GO:0009089
Cpe16g00254 497 PRINTS Diaminopimelate decarboxylase signature 461 483 IPR002986 GO:0008836|GO:0009089
Cpe16g00254 497 Gene3D Alanine racemase 112 357 IPR029066 -
Cpe16g00254 497 PANTHER DIAMINOPIMELATE DECARBOXYLASE 1, CHLOROPLASTIC-RELATED 70 494 - -
Cpe16g00254 497 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 135 153 IPR022653 -
Cpe16g00254 497 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 111 451 IPR022643 GO:0003824
Cpe16g00254 497 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 306 319 IPR022657 -
Cpe16g00254 497 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 114 360 IPR022644 GO:0003824
Cpe16g00254 497 CDD PLPDE_III_DapDC 106 472 IPR002986 GO:0008836|GO:0009089
Cpe16g00254 497 TIGRFAM lysA: diaminopimelate decarboxylase 83 491 IPR002986 GO:0008836|GO:0009089
Cpe16g00254 497 PANTHER DIAMINOPIMELATE DECARBOXYLASE 70 494 - -
Cpe16g00254 497 Hamap Diaminopimelate decarboxylase [lysA]. 92 495 IPR002986 GO:0008836|GO:0009089
Cpe16g00254 497 SUPERFAMILY PLP-binding barrel 105 361 IPR029066 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00254 K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] - csv:101208417 882.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00341 Cpe-Chr7:2224166 Cpe16g00254 Cpe-Chr16:4553032 1.64E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g352 . . . . . . . . . . . Cma20g00836 . Car20g00722 . . . . . . . . . . . . . . . . . . . . . Lsi10g00389 . Chy11g00364 . . . . . . . . . Sed01g0290 . Cmo20g00844 . . . . Cpe16g00254 . Bhi10g01983 Tan05g1282 Cmetu11g0387 . . . . . . . . . . . . Csa02g01279 . Cme11g00133
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011287 1 1 1 1 1 0 2 0 1 1 1 1 1 1 1 1 1 2 1 0 1 1 0 0 1 1 1 2 1 2 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00254 Cpe_Chr16 FPKM 3.781566 4.980821 7.490138 8.416929 15.315083 14.551266 16.030519 5.677856 5.124329 6.206768