Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00255 ATGTCGGAGGAAGAGAGAAAGACAAGGCTAGCATCTCTTAAGCAAAAGGCAATCAACGCCTCAAACAAGTTCAGACATTCAATGAAGAAGAAAAGCAGAAGAAACAGCAGCAGAGTGATGTCAATTTCCATAGAAGACGACATCGACGCAGAGGAATTACAAGCAGTAGACGCCTTCCGCCAAGCTCTCATACTAGAAGAGCTCCTCCCTTCAAAACATGACGACCATCACATGATGCTAAGGTTCTTGCGAGCTAGAAAGTTCGACATCGACAAGTCAAAGCAAATGTGGTCGGACATGCTCCAATGGCGCAAAGAGTTCGGATCCGACACAATAATGGAGGACTTTGAATTCAAGGAGATAGACGACGTGTTGAAGTATTATCCACAAGGACATCATGGAGTCGACAAAGATGGACGACCTGTGTACATCGAAAGGCTCGGGATGGTCGACTCGACCAAGCTCTTGGAAGTGACGACGATGGATCGATACGTGAATTACCATGTCCAGCTCCTCCCTTCAAAACATGACGACCATCACATGATGCTAAGGTTCTTGCGAGCTAGAAAGTTCGACATCGACAAGTCAAAGCAAATGTGGTCGGACATGCTCCAATGGCGCAAAGAGTTCGGATCCGACACAATAATGGAGGACTTTGAATTCAAGGAGATAGACGACGTGTTGAAGTATTATCCACAAGGACATCATGGAGTCGACAAAGATGGACGACCTGTGTACATCGAAAGGCTCGGGATGGTCGACTCGACCAAGCTCTTGGAAGTGACGACGATGGATCGATACGTGAATTACCATGGACTCAAGAGCTTCAACAAATCTGCACGGGAACTCATCCAAAGGCTGCAGAAGGTTGATGGTGACAACTATCCAGAGATAAGTGGTTCATCCAACTTAGAATCAGCTCCTGAGGCGGCGGCGGCGGCGGCAGAGTCTTGCACGTCCCCAAAGCAAGCAAAACCGTCCCCTGTTTCAGCAGCAGAGATGGATTGCGAGTATCAATATAACAAGTTCGTCTCTGTGGTCGATAAAAACATGGATCAAAATTGGGCAATTTCAAATGAAAAATACAATTTATCCAAAGTGCATGAAAACTACAAAGTCCCAGATGGTTTCAGCAACCAACTAGTTGGAGGAATAATGGCTGTGGTAATGGGTATAGTGACAATGGTCCGGCTAACTAGAACCATGCCAAAGAAGCTCACAGAGGCAGCCATCTACAGCAGCACGGTCTACTACGACGGTTCGATGCCGAGACATCCAGCGTTGCCGCCTCCCGCCGCCGTGCCTCTTAGCGACTACATGACAATGATGAAGCGCATGGCGGAGCTCGAAGAGAAAGTCAATGTCCTCAACATGAAACCGGCCGCCATGCCGGCTGATAAAGAGGAAATGCTCAACATTGCTTTGGGCAAAGTCGAAACTTTGGAACAAGAATTGCAAGAAACTAAGAAGGCGCTCGAGGAATCTCTTTCTCGAGCGGCCGAGCTCAGCAGCTACATAGAAAAGAAGAAGAAGAAGAAGATGATGGTGAACCCATTCCGCTGGGGAATGTGA 1572 47.58 MSEEERKTRLASLKQKAINASNKFRHSMKKKSRRNSSRVMSISIEDDIDAEELQAVDAFRQALILEELLPSKHDDHHMMLRFLRARKFDIDKSKQMWSDMLQWRKEFGSDTIMEDFEFKEIDDVLKYYPQGHHGVDKDGRPVYIERLGMVDSTKLLEVTTMDRYVNYHVQLLPSKHDDHHMMLRFLRARKFDIDKSKQMWSDMLQWRKEFGSDTIMEDFEFKEIDDVLKYYPQGHHGVDKDGRPVYIERLGMVDSTKLLEVTTMDRYVNYHGLKSFNKSARELIQRLQKVDGDNYPEISGSSNLESAPEAAAAAAESCTSPKQAKPSPVSAAEMDCEYQYNKFVSVVDKNMDQNWAISNEKYNLSKVHENYKVPDGFSNQLVGGIMAVVMGIVTMVRLTRTMPKKLTEAAIYSSTVYYDGSMPRHPALPPPAAVPLSDYMTMMKRMAELEEKVNVLNMKPAAMPADKEEMLNIALGKVETLEQELQETKKALEESLSRAAELSSYIEKKKKKKMMVNPFRWGM 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4563734 4569645 + Cp4.1LG16g02510.1 Cpe16g00255 482630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00255 523 Coils Coil 439 459 - -
Cpe16g00255 523 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 2 170 - -
Cpe16g00255 523 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 318 515 - -
Cpe16g00255 523 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 171 271 - -
Cpe16g00255 523 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 272 297 - -
Cpe16g00255 523 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 272 297 - -
Cpe16g00255 523 SUPERFAMILY CRAL/TRIO N-terminal domain 170 219 IPR036273 -
Cpe16g00255 523 SMART CRAL_TRIO_N_2 75 100 IPR011074 -
Cpe16g00255 523 SMART CRAL_TRIO_N_2 178 203 IPR011074 -
Cpe16g00255 523 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 120 307 IPR001251 -
Cpe16g00255 523 Coils Coil 471 502 - -
Cpe16g00255 523 SUPERFAMILY CRAL/TRIO domain 223 300 IPR036865 -
Cpe16g00255 523 Gene3D - 44 172 IPR036865 -
Cpe16g00255 523 SUPERFAMILY CRAL/TRIO N-terminal domain 46 116 IPR036273 -
Cpe16g00255 523 SUPERFAMILY CRAL/TRIO domain 120 172 IPR036865 -
Cpe16g00255 523 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 2 170 - -
Cpe16g00255 523 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 318 515 - -
Cpe16g00255 523 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 171 271 - -
Cpe16g00255 523 Pfam CRAL/TRIO, N-terminal domain 72 99 IPR011074 -
Cpe16g00255 523 Pfam CRAL/TRIO, N-terminal domain 175 202 IPR011074 -
Cpe16g00255 523 Gene3D - 173 272 IPR036865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00255 - - - csv:101214906 617.461
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01273 Cpe16g00255 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00255 Cpe-Chr16:4563734 Cpe19g00824 Cpe-Chr19:6156893 7.38E-34 dispersed
Cpe16g00255 Cpe-Chr16:4563734 Cpe16g00256 Cpe-Chr16:4570028 2.68E-104 tandem
Cpe10g00635 Cpe-Chr10:3658837 Cpe16g00255 Cpe-Chr16:4563734 1.89E-125 wgd
Cpe16g00255 Cpe-Chr16:4563734 Cpe05g01273 Cpe-Chr5:8872821 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g351 . . . . . . . . . . Cma02g00384 Cma20g00835 Car02g00249 Car20g00721 . . . . . . . . . . . . . . . . . Cone12ag1161 Cone8ag1210 Cone3ag1174 Cone10ag0980 Lsi10g00390 . Chy11g00363 . Blo04g00519 . . . . . . . Sed01g0289 Cmo02g00390 Cmo20g00843 . . . . Cpe16g00255 Cpe05g01273 Bhi10g01982 Tan05g1281 Cmetu11g0971 . Hepe08g1000 . . . . . . . . . . Csa02g01280 . Cme11g00134
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0055462 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00255 Cpe_Chr16 FPKM 38.469326 43.172245 21.81118 22.241034 5.397446 5.670599 4.37285 24.199226 25.780369 24.648718