Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00260 ATGGGATCTGCGTGTTGTGTTGCTGCTAGGGAAAATACTATAGTTAGTGGATCTGGAAGTGAAACCTTATGTAGGAATATGAGGTATTCTCCTAGTTGGAGCTTTCGATGGGATAATCGTGGACGAGTAGCTGGCGAAGAGACTTCGATAAATTGGTTTTCTGATGGTGTTAGTCGCAATGATAGAGTGGAACTGAAATATGAGTCAGCGTATGCGTCCGAGGATGGAAGTCCACTTGAACATCTCCGTAGACGTACATGGCAAAAGTCTCCACCGCCAGAAGGCACAACTAATAATTTGAGGACTCCTAGTTCAGGTCAATCAAATTCAAGGAATGTATCCACAGATGTGAGTTTAGAACAGGTGAAGGAGGCTATGGATTCTCCCACAGCCTCATATAAGTCTCCTGCAAAATTGTCACTTTCATTGCCTTCAACTTCATCTTTGTCAACCTCTCCTTTGTCATCACAGAGCTATCTGCCTCCAACCAATTCATCCCTAACAAGATGTACCCATCGATCTCCAGGACATCAGCTGTTGCGTCAAGGTTCTGACAACCGAATCCGAGGATTAAAATCACCAGGTAGCTATTTAGCTTCTGAAGATAGACCAAGGCTTCCCTCTTGGAGCAACGAATCGGTCCGTGACTCACATGGAGGGTCTTCAGATTGTTGGTCTGTCCATGCTTTCTCTGAGCTCATGGCCACTTCTCATCGAGAAAGATGGTCTTTTGATAGTGACTCTTTCGGCTTTAACGGTGAGAAAATAGCCAGGTCTAGTAGTCGAATTTCAACCTCCTCAGTTGATTTGCAAACTTGCGGAGTTTGCTCAAAACTATTGACCGAGAAATCCTCATGGAGTAGCCAAAGGATCATTGCTAACAACGAGCTTTCTGTTGCTGCTGTACTAACCTGTGGACATGTTTATCATGCCGATTGCTTGGAGAGTATGACACCCGAGATTTACAAGTACGACCCCGCTTGTCCCGTTTGTACCTTCGGGGAGAAGCACACGCAGAAGCTGTCCGAAAAGGCGCTTAAAGCTGAAATGGACTGGAAGAGTCTATACAAGAGATCCAAAAACTGTAATGCAGATAGCCATTTTGAAGCAAACAATCCTTTCAAAAACCATGCCCGTCTCGAAAAGGGCTCTAGAATGTCTGCGAGTTCTAGCACGAGAAGCTCCTCAGGAAAGCCGTTCTTGAAACGGCACTTCTCCTTCGGCTCGAAGGGATCTTCTAGAGTGATGTCTGATAATCATCACTCCACAAGAAGGAAAGGTTTCTTCTGGGCAAAATCTAGCAAAGTATGA 1311 45.08 MGSACCVAARENTIVSGSGSETLCRNMRYSPSWSFRWDNRGRVAGEETSINWFSDGVSRNDRVELKYESAYASEDGSPLEHLRRRTWQKSPPPEGTTNNLRTPSSGQSNSRNVSTDVSLEQVKEAMDSPTASYKSPAKLSLSLPSTSSLSTSPLSSQSYLPPTNSSLTRCTHRSPGHQLLRQGSDNRIRGLKSPGSYLASEDRPRLPSWSNESVRDSHGGSSDCWSVHAFSELMATSHRERWSFDSDSFGFNGEKIARSSSRISTSSVDLQTCGVCSKLLTEKSSWSSQRIIANNELSVAAVLTCGHVYHADCLESMTPEIYKYDPACPVCTFGEKHTQKLSEKALKAEMDWKSLYKRSKNCNADSHFEANNPFKNHARLEKGSRMSASSSTRSSSGKPFLKRHFSFGSKGSSRVMSDNHHSTRRKGFFWAKSSKV 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4619644 4624816 + Cp4.1LG16g02610.1 Cpe16g00260 482635

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00260 436 PANTHER EXPRESSED PROTEIN 1 430 - -
Cpe16g00260 436 SMART ring_2 273 331 IPR001841 -
Cpe16g00260 436 MobiDBLite consensus disorder prediction 206 220 - -
Cpe16g00260 436 SUPERFAMILY RING/U-box 272 332 - -
Cpe16g00260 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 333 IPR013083 -
Cpe16g00260 436 PANTHER BNAA09G43140D PROTEIN 1 430 - -
Cpe16g00260 436 MobiDBLite consensus disorder prediction 373 402 - -
Cpe16g00260 436 MobiDBLite consensus disorder prediction 90 121 - -
Cpe16g00260 436 CDD RING-H2 298 331 - -
Cpe16g00260 436 MobiDBLite consensus disorder prediction 383 399 - -
Cpe16g00260 436 MobiDBLite consensus disorder prediction 133 181 - -
Cpe16g00260 436 MobiDBLite consensus disorder prediction 71 221 - -
Cpe16g00260 436 ProSiteProfiles Zinc finger RING-type profile. 273 332 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00260 - - - bhj:120088479 764.607
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01277 Cpe16g00260 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01212 Cpe-Chr4:10252798 Cpe16g00260 Cpe-Chr16:4619644 2.75E-12 dispersed
Cpe16g00260 Cpe-Chr16:4619644 Cpe18g00525 Cpe-Chr18:5934318 2.44E-12 dispersed
Cpe15g00551 Cpe-Chr15:6359402 Cpe16g00260 Cpe-Chr16:4619644 1.62E-129 wgd
Cpe16g00260 Cpe-Chr16:4619644 Cpe05g01277 Cpe-Chr5:8914985 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g344 . . . . Bpe07g00416 . . Bma12g00499 . . Cma02g00378 Cma20g00829 Car02g00245 Car20g00714 Sed05g2310 . . Bhi05g01247 Tan02g0782 Cmetu01g1358 . . . . . . . . . . . . . . . Lsi10g00395 . Chy11g00356 . Blo04g00522 . Bda15g00059 . . . . . Sed01g0284 Cmo02g00384 . . . . . Cpe16g00260 Cpe05g01277 Bhi10g01975 Tan05g1268 Cmetu11g0620 . Hepe08g0995 . . . . . . . . . . Csa02g01285 . Cme11g00139
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001394 4 6 2 3 3 2 3 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 2 2 2 2 5 5 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00260 Cpe_Chr16 FPKM 0.0 0.0 1.432239 1.296427 3.68245 3.944552 2.665565 0.0 0.0 0.0