Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00264 ATGGACGCGACCATTGACTTCTCCCCCAGTAGCTACGCCACTCCAAATGGACTGTATTATGGGAAACGTAAGAGATTAAAACTATCTACCGATGGAAGAAATCTTCCCAGCACGGCCACCTTTTCTGCCCAAAAGTGTGACACGCCGAGACAAAACAAAATGAAGAACTCAGCAAAAATAGTTGATTACTCTGATCCGTTTGCCATTAATAATTTGATCGATGGTTTGAATTGTGGTCAGTTTGGAAGTGTCACTAAAGAGATAGAAGCCCTTGTTTCCCATAAGATGCAAATTCTAAGTCCTTACATTGCAAAGTATCCTACGCTGTCAAGTACGTTATTTGATCTGGGGAGACGTAATGAGTGTACAGAGGCAACGAACCATCAAGCTTCCCCGTTGGTTCATAATCTCATTGATTTGGAAGATGATTCTGCCCTTGATGATGTTTGTTCCAACCATGTCGAGAAATCACGATTGCCTATTGTAATAATTGATTCTGATGAGGAAGAAAGCAAAGATCAGAGGGTTATACATCCTTTTCAAGAGGTTGTGCTGCCTAGACCACCTGGACAAAGTTTGTTCAAGGCCATATCGGTAGTGGATCACCGAGCTTTAAATGGGGAGGAAGCAACTCCTATTAGTGAAAGTGAAACTATTAGTAAGAAGGACAAAGGTGTTTACGTTGGTGTAGAAGAGGACGAGGATGAGGTCAGCGAACAGGCTAACAGTGAAGATGATGGCCTTGGAGATATTTGGAACGACATGAATATGGCATTAGAATGTTCCAAGGACTTGGATGTTGCCGTAGATTCATCATCTAATCAACCAAGCACAGATGCTGTGGACTGTGATCATTCTTTTCTCTTTAAGGATGATCTTGGTTATGTCTGTCGCATATGTGGGGTTATTGACAGAGGAATTGAGACCATTTTTGAGTTTCAGTACAACAAGGGTAAGAGGAGCACAAGAACATACATGTCTGAATCTCGTAACAAAGATTCAGGCGATATTGTTGGAGTTAAAATCTCAGAAGATGATTTGACGGTCACTGAAATTTCTGCACACCCTAGACATATGAAGCAAATGAAACCTCATCAAATTGAGGGTTTCAATTTCCTTATAAGCAACTTGGTAACGGACAATCCAGGAGGCTGCATTTTAGCCCATGCTCCTGGTTCTGGAAAAACATTTATGATAATCAGTTTCATGCAAAGTTTCTTAGCTAAGTATCCACAGGCTAGACCATTGGTTGTGCTTCCCAAAGGAATCTTAGCTATATGGAAAAAGGAGTTTCAGATTTGGCAAGTGGAAGATATTCCACTCTATGATTTCTATTCCGTTAAAGCAGATAATAGGGCTCAACAGCTAACCGTTCTGAATCAGTGGGTCGAGCACAAGAGTATCCTGTTCTTAGGATACAAACAATTTTCCACGATCGTCTGCGATGTCGAAACCAATGCTGCATCAACTGCATGTCAAAATATATTGCTCAAGGTTCCCTCCATTCTCATCCTAGATGAGGGGCATACACCAAGAAATGAGAACACTGATATTTTGCAAACTCTTGCCAAAGTCAGAACTCCACGAAAAGTGGTTCTTTCAGGAACCTTATATCAAAATCATGTTAAAGAGGTATTCAATATAGTGAATCTCGTTCGACCGAAGTTCATGAGATCAGAAACTTCTCGACCTATCATCAAACGTATCATGTCAAGAGTGGATATACCTGGTGCGAGGAAGCAGTTCAAAGCAGGTGTGGATGCTGCTTTTTATGACTTGGTGGAACACACGCTTCAGAAGGATACAGATTTCAGGAGGAAAGTGAGTGTCATCCATGATTTACGTGAGATGACTAGCAAGATTCTGCATTATTATAAAGGAGATTTTCTCGATGAGCTCCCTGGACTGGTTGACTTCACTGTGGTGCTAAATCTCACCCCTAAACAGAAGCATGAAGGTGAAAAAGTCAAAAAGTTTAACAGGAAGTTCAAAATAAGCTCTGCTGGTAGTGCTGTTTATTTGCATCCAAAGTTGAATGTTTTCTCTGTTAATGCTACTGTGACGGATGATAAAATAGACGAGGTCATCGACCAGCTGGACGTTAAAGATGGAGTGAAAGCGAAATTCTTTCTTAATATGCTGAATTTGTGCGCTACTACTGGAGAGAAGCTGCTGGTATTTAGCCAATACCTCCTTCCTTTGAAATTCATGGAGAGATTGGTTGTGCAGAAGAAGGGTTGGAGTCCAGGAAAAGAAACTTTCATGATATCCGGTGAAACAACTTCCGAGCATCGGGAATGGTCGATGGATCGTTTCAACAACTCACCTGATGCCAAAGTCTTCTTTGGCTCCATCAAGGCTTGTGGGGAGGGCATATCTTTGGTAGGGGCATCACGTATCATCATCTTGGATGTTCATCTCAATCCATCAGTGACCCGCCAGGCAATTGGTCGTGCATTCCGTCCCGGTCAAACAAAGAAAGTCTTCGCATATAGATTGGTGGCTGCTGATTCACCTGAAGAGGGAGATCACAGTACTTGCTTCAAGAAGGAACTAATTGCAAAAATGTGGTTTGAATGGAACGAGTATTGTGGCTATCACGACTTTGAAGTGGAGACGGTCGACGTGAAAGAGTGTGGCGATAACTTTCTAGAAACCCCGCTTCTTAGACAAGATGTCAAAGTTCTGTACAGAAGGTAG 2700 41.96 MDATIDFSPSSYATPNGLYYGKRKRLKLSTDGRNLPSTATFSAQKCDTPRQNKMKNSAKIVDYSDPFAINNLIDGLNCGQFGSVTKEIEALVSHKMQILSPYIAKYPTLSSTLFDLGRRNECTEATNHQASPLVHNLIDLEDDSALDDVCSNHVEKSRLPIVIIDSDEEESKDQRVIHPFQEVVLPRPPGQSLFKAISVVDHRALNGEEATPISESETISKKDKGVYVGVEEDEDEVSEQANSEDDGLGDIWNDMNMALECSKDLDVAVDSSSNQPSTDAVDCDHSFLFKDDLGYVCRICGVIDRGIETIFEFQYNKGKRSTRTYMSESRNKDSGDIVGVKISEDDLTVTEISAHPRHMKQMKPHQIEGFNFLISNLVTDNPGGCILAHAPGSGKTFMIISFMQSFLAKYPQARPLVVLPKGILAIWKKEFQIWQVEDIPLYDFYSVKADNRAQQLTVLNQWVEHKSILFLGYKQFSTIVCDVETNAASTACQNILLKVPSILILDEGHTPRNENTDILQTLAKVRTPRKVVLSGTLYQNHVKEVFNIVNLVRPKFMRSETSRPIIKRIMSRVDIPGARKQFKAGVDAAFYDLVEHTLQKDTDFRRKVSVIHDLREMTSKILHYYKGDFLDELPGLVDFTVVLNLTPKQKHEGEKVKKFNRKFKISSAGSAVYLHPKLNVFSVNATVTDDKIDEVIDQLDVKDGVKAKFFLNMLNLCATTGEKLLVFSQYLLPLKFMERLVVQKKGWSPGKETFMISGETTSEHREWSMDRFNNSPDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTKKVFAYRLVAADSPEEGDHSTCFKKELIAKMWFEWNEYCGYHDFEVETVDVKECGDNFLETPLLRQDVKVLYRR 899
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4642303 4648654 + Cp4.1LG16g02600.1 Cpe16g00264 482639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00264 899 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 712 877 IPR001650 -
Cpe16g00264 899 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 501 861 IPR027417 -
Cpe16g00264 899 CDD SF2_C_SNF 690 834 - -
Cpe16g00264 899 Gene3D - 634 875 IPR027417 -
Cpe16g00264 899 Pfam Helicase conserved C-terminal domain 712 822 IPR001650 -
Cpe16g00264 899 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 17 899 IPR044567 GO:0080188
Cpe16g00264 899 Pfam SNF2-related domain 381 581 IPR000330 GO:0005524|GO:0140658
Cpe16g00264 899 Gene3D - 330 582 IPR038718 -
Cpe16g00264 899 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 348 561 IPR027417 -
Cpe16g00264 899 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 376 555 IPR014001 -
Cpe16g00264 899 PANTHER PROTEIN CHROMATIN REMODELING 35 17 899 - -
Cpe16g00264 899 SMART ultradead3 358 566 IPR014001 -
Cpe16g00264 899 SMART helicmild6 735 823 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00264 K10875 RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-] - csv:101207775 1634.0
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01280 Cpe16g00264 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00102 Cpe-Chr1:592859 Cpe16g00264 Cpe-Chr16:4642303 8.64E-80 dispersed
Cpe15g00296 Cpe-Chr15:3692070 Cpe16g00264 Cpe-Chr16:4642303 6.81E-85 dispersed
Cpe16g00264 Cpe-Chr16:4642303 Cpe19g01203 Cpe-Chr19:8078742 6.59E-30 dispersed
Cpe16g00264 Cpe-Chr16:4642303 Cpe05g01280 Cpe-Chr5:8929219 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g3 . Blo15g00679 Bda06g00991 . . . . Bma12g00550 . . Cma02g00375 Cma20g00824 Car02g00242 Car20g00710 Sed03g1723 . . Bhi05g01788 Tan02g2021 Cmetu03g0999 . . . . . . . . . . . Cone12ag1169 Cone8ag1217 . . Lsi10g00400 . Chy11g00351 . . Blo13g00542 . . . . . . Sed01g0278 Cmo02g00382 Cmo20g00835 . . . . Cpe16g00264 Cpe05g01280 Bhi10g01967 Tan05g1260 Cmetu11g0821 . . . . . . . . . . . . Csa02g01291 . Cme11g00153
Vvi3g335 . Blo15g00756 Bda06g01081 . . . . . . . Cma02g00375 Cma20g00824 Car02g00242 Car20g00710 . . . . . . . . . . . . . . . . . . . . . Lsi10g00400 . Chy11g00351 . . . . . . . . . . Cmo02g00382 Cmo20g00835 . . . . Cpe16g00264 Cpe05g01280 Bhi10g01968 . . . Hepe08g0991 . . . . . . . . . . Csa02g01291 . Cme11g00153
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004368 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 2 4 1 3 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50694 PF00176 SNF2_N 3.60E-19 CL0023 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00264 Cpe_Chr16 FPKM 14.948942 15.324536 18.124638 18.330702 20.588968 20.637787 20.659578 29.791208 29.070732 27.578083