Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00266 ATGGCGGAGCAAAGGACCGAGGATGATAGCTCAACGAAGGAAGTCGGAGAGGTGGAGAAGGAGAAACAGCAGAAGAATATGGATCGGGAACTTCTCAGCTGCTTGCTCCAACCTACAAGTATTGGTGTTGATCCGGACTATATTGGCATGCGTCGTCTCTTGCTCCATCGGAAGGCTGAAGCCGCGGTTCTTCGTCGGAAAGCTTCTTCTTCTATTGGTGTTTGCCAAAGGACTGGAAGTGCAATGGAAAAGGTTATGTGGCATTTCGCAATTACATACGCCGGCCAAGGAATTGGGAAAGCTCGCGTATACCAAGTCTTCAAAGCACCCCCGGAAGCAGTGGAAGATGGATTCTTCCTCCAAGTTCGATCTCTGCCTTGCATGAGGTGGATAGCTGGAGTTCTATCAAGCTTGAAATCTTTGGCTTCCATAACAGTAAACAACAGTGGTTTTGAATCTAATGGGTTCTTCTTGTCCGAGCTTGTACTCGACTTACAGAGTCAACGAAGATCAAGTTTTAGCTCAAATGCAAGTGATAACAGTCAGCTACATACTCGTAGAACTGAATTTGCATATTCTTTTGTCGGAATGCATTGTATATTTGATCAATGCAAAGTCGCTGTTACGGTTTTGAAGTTTGGGCACATGAGCTCTGATCTATTAGCATATGGTGCAGCGGATGGGTCCTTGACTGTATGCAATGTCTCTGAACCATCTTCAACCGTCAAGCATTTGCTGGGCCATTCAAAAGACTTCACAGACTTCGATTTTTCATCGAATAATCAGTACATTGCATCATCGTCCATGGATAAAACCGTTAGAGTATGGGAGATATCAAGGGGAATTTGCATTAGAGTAATCTATGGAGTATCTTCACAACTGTGTATACGTTTTCATCCGGTTTGGGACCAAGTTAATGCCTGCCAGAATCTTAACTTTCAAGAGACCAATAACGGTGTAGAAATGGTAGGAGTCGTCAACAAACTTGTGGGTGTCTCTGTGAGGGTAAATAACAACTTCCTCTCAGTTGGCAATGCAAATAAGGAAATCACGGTGTTTAATTTCAGCACTGGGAGGATTGTGACAAAATTAGTTCTTGATAGTGAGGTTACATCCATGGACCATGATCACACTGGTCAGATCCTTTTCTGTGGAGACGGAAATGGATATGTTTACTCAGTGAGCATGAACTCTCATACAGGAGCTTTATCCCGTGCTCACCGCCAATGGTGTAGTAGCCGGCGCAAATCTCCTGTATGTACTGTACAATATCGAAGCTTCTCTCTGCTGGCCAGGGGCCCTGTATTGCTAACTTGCACTCAAGATGGGAACTTGTCTTTCTTCAGTATTGCTTTGGAAGTTCAAGGATATTTGACCCTTCGTTGCTCACTCAAATTATCTCCAAGGATGCATAGCATCCGTGCTTCATTCTGCCCCCTACTCTCCCTGGAAAAAGGAGAGTACATTGTTGCAGGAAGTGAGGATTCAAATGTCTACTTCTATGATTTGACACGACCCAAACATACTTGTGTCAACAAGCTCCAGGGCCACCAGTTTCCAGTCATCGGGGTTTCGTGGAACCATGGGGAGAATCTGTTGGCGTCGTCAGATCTTTATGGGACGGTAATTGTATGGAAGAGATCAAAGATAAGTTAG 1656 44.5 MAEQRTEDDSSTKEVGEVEKEKQQKNMDRELLSCLLQPTSIGVDPDYIGMRRLLLHRKAEAAVLRRKASSSIGVCQRTGSAMEKVMWHFAITYAGQGIGKARVYQVFKAPPEAVEDGFFLQVRSLPCMRWIAGVLSSLKSLASITVNNSGFESNGFFLSELVLDLQSQRRSSFSSNASDNSQLHTRRTEFAYSFVGMHCIFDQCKVAVTVLKFGHMSSDLLAYGAADGSLTVCNVSEPSSTVKHLLGHSKDFTDFDFSSNNQYIASSSMDKTVRVWEISRGICIRVIYGVSSQLCIRFHPVWDQVNACQNLNFQETNNGVEMVGVVNKLVGVSVRVNNNFLSVGNANKEITVFNFSTGRIVTKLVLDSEVTSMDHDHTGQILFCGDGNGYVYSVSMNSHTGALSRAHRQWCSSRRKSPVCTVQYRSFSLLARGPVLLTCTQDGNLSFFSIALEVQGYLTLRCSLKLSPRMHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLTRPKHTCVNKLQGHQFPVIGVSWNHGENLLASSDLYGTVIVWKRSKIS 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4661352 4676579 - Cp4.1LG16g02690.1 Cpe16g00266 482641

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00266 551 SUPERFAMILY WD40 repeat-like 207 546 IPR036322 GO:0005515
Cpe16g00266 551 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 286 IPR001680 GO:0005515
Cpe16g00266 551 SMART WD40_4 415 449 IPR001680 GO:0005515
Cpe16g00266 551 SMART WD40_4 466 502 IPR001680 GO:0005515
Cpe16g00266 551 SMART WD40_4 238 277 IPR001680 GO:0005515
Cpe16g00266 551 SMART WD40_4 357 395 IPR001680 GO:0005515
Cpe16g00266 551 SMART WD40_4 193 234 IPR001680 GO:0005515
Cpe16g00266 551 SMART WD40_4 507 546 IPR001680 GO:0005515
Cpe16g00266 551 ProSiteProfiles Trp-Asp (WD) repeats profile. 514 551 IPR001680 GO:0005515
Cpe16g00266 551 Pfam WD domain, G-beta repeat 241 276 IPR001680 GO:0005515
Cpe16g00266 551 Pfam WD domain, G-beta repeat 510 546 IPR001680 GO:0005515
Cpe16g00266 551 Gene3D - 192 321 IPR015943 GO:0005515
Cpe16g00266 551 MobiDBLite consensus disorder prediction 1 24 - -
Cpe16g00266 551 PANTHER WD REPEAT-CONTAINING PROTEIN 13 16 549 - -
Cpe16g00266 551 ProSitePatterns Trp-Asp (WD) repeats signature. 264 278 IPR019775 -
Cpe16g00266 551 Gene3D - 327 477 IPR015943 GO:0005515
Cpe16g00266 551 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 245 281 - -
Cpe16g00266 551 Gene3D - 478 550 IPR015943 GO:0005515
Cpe16g00266 551 PANTHER WD REPEAT PROTEIN 26-RELATED 16 549 - -
Cpe16g00266 551 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 514 551 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00266 K24739 WDR13; WD repeat-containing protein 13 - csv:101204649 713.761
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00266 Cpe-Chr16:4661352 Cpe17g00855 Cpe-Chr17:6641703 5.32E-20 dispersed
Cpe16g00266 Cpe-Chr16:4661352 Cpe05g01283 Cpe-Chr5:8948017 1.20E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g9 . Blo15g00678 Bda06g00950 . . . . . . . . Cma20g00821 . Car20g00708 . . . . . . . . . . . . . . . . . . . Cone3ag1222 Cone10ag1107 Lsi10g00404 . Chy11g00347 . . . . . . . . . Sed05g3536 . Cmo20g00830 . . . . Cpe16g00266 . Bhi10g01963 Tan05g1257 Cmetu11g1123 . Hepe08g0987 . . . . . . . . . . Csa02g01296 . Cme11g00157
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010476 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00266 Cpe_Chr16 FPKM 44.314922 42.857384 0.0 0.0 0.0 0.0 0.160695 0.0 0.0 0.0