Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe16g00269 | ATGAAGATCCGCTGTGATGTTTGCAACAGAGAAGAAGCCTCTGTTTTTTGCCCCTCCGATGAAGCCGCTCTCTGTTCTGCCTGCGACCACCACGTCCACTGTGCCAACAAGCTCGCCGAGAAACACAGCCGATTCACACTCCTCCGATCCACTCCCACCGTCAATTCACCGCCGTCGTGCGATATCTGCCAGGTCCGGCGAGCGTTTCTATTCTGTCTTGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATTCCAATTCACGGCGCCAGCGAACACACCCAGAAACACAGTCGGTTTCTTCTCACTGGTGTGAAGGTCTCACCGTCGCCGACGACTTCCTCTTCCTCATCCTCTGTCTCCGGCGGCGGCGATGAAAGCGAGGAGGTTACAATTGAAGCTGAAATTGGGATCTTTAAGACGAGATCGAGGAAGGAGGCGAAAATGGGGTCAAAAGGGTTGATTCGAGGTCCTGTAATGGAGGATTTACAGCCGCCAATTGTTGGGAAATTTGGTGGAATGAGTGAAAATGGGGTTGCGTTTTCGACAAGTAACATATCGGAGTATTTGGAGAGCTTGCCGGGTTGGTGCGTGGAGGAGTTTCTTGATTCTTCGTGTGTTGCTGATGTTTTCTGTAAAGTTTGA | 645 | 51.01 | MKIRCDVCNREEASVFCPSDEAALCSACDHHVHCANKLAEKHSRFTLLRSTPTVNSPPSCDICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPTTSSSSSSVSGGGDESEEVTIEAEIGIFKTRSRKEAKMGSKGLIRGPVMEDLQPPIVGKFGGMSENGVAFSTSNISEYLESLPGWCVEEFLDSSCVADVFCKV | 214 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 4700975 | 4701619 | + | Cp4.1LG16g02630.1 | Cpe16g00269 | 482644 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe16g00269 | 214 | Pfam | B-box zinc finger | 57 | 94 | IPR000315 | GO:0008270 | |
| Cpe16g00269 | 214 | Gene3D | Classic Zinc Finger | 1 | 102 | - | - | |
| Cpe16g00269 | 214 | ProSiteProfiles | Zinc finger B-box type profile. | 55 | 102 | IPR000315 | GO:0008270 | |
| Cpe16g00269 | 214 | PANTHER | B-BOX ZINC FINGER PROTEIN 20 | 1 | 213 | - | - | |
| Cpe16g00269 | 214 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
| Cpe16g00269 | 214 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
| Cpe16g00269 | 214 | SMART | bboxneu5 | 55 | 102 | IPR000315 | GO:0008270 | |
| Cpe16g00269 | 214 | MobiDBLite | consensus disorder prediction | 106 | 125 | - | - | |
| Cpe16g00269 | 214 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
| Cpe16g00269 | 214 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 213 | - | - | |
| Cpe16g00269 | 214 | MobiDBLite | consensus disorder prediction | 106 | 129 | - | - | |
| Cpe16g00269 | 214 | CDD | Bbox1_BBX-like | 60 | 102 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe04g00107 | Cpe16g00269 | CCT | |
| Cpe15g00559 | Cpe16g00269 | CCT | |
| Cpe04g00107 | Cpe16g00269 | ECH | |
| Cpe15g00559 | Cpe16g00269 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe16g00269 | Cpe-Chr16:4700975 | Cpe17g01088 | Cpe-Chr17:8252826 | 8.70E-32 | dispersed | |
| Cpe10g00649 | Cpe-Chr10:3738125 | Cpe16g00269 | Cpe-Chr16:4700975 | 7.48E-20 | wgd | |
| Cpe11g00234 | Cpe-Chr11:1265779 | Cpe16g00269 | Cpe-Chr16:4700975 | 1.62E-46 | wgd | |
| Cpe15g00559 | Cpe-Chr15:6419234 | Cpe16g00269 | Cpe-Chr16:4700975 | 4.10E-64 | wgd | |
| Cpe16g00269 | Cpe-Chr16:4700975 | Cpe02g00094 | Cpe-Chr2:475486 | 5.09E-49 | wgd | |
| Cpe16g00269 | Cpe-Chr16:4700975 | Cpe04g00107 | Cpe-Chr4:966757 | 6.02E-67 | wgd | |
| Cpe16g00269 | Cpe-Chr16:4700975 | Cpe07g00385 | Cpe-Chr7:2483126 | 3.25E-47 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 50696 | PF00643 | zf-B_box | 5.50E-06 | No_clan | Cpe | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe16g00269 | - | - | bhj:120089126 | 266.544 |