Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00276 ATGAGAGGCATTTGTTTCGGTGGTTTGGTTGTAGAAAAAATGGAGTGTTTGGAGGCTAAGGCTTTGAAATCGAGTTTCCACTGGGAATTAGCCATGAAATTTGCTCAACCAGATGCTATGGTGGAGGAAGGTGGGTGTTCGAACGGAGCTGATCTCGTCGCCGGCGAGGATTTTGAGGTCGACGAGTTTTTGAACTTCTCTAATGGAGATTTTGAACATGGGTCTGCTTTGAGAGTTCAAGAAGATGACGATTACGAAGAGTTTGAGAAAAATCGGCTCTCTGTTTCGCCGTATTCGAACCAGTCCGGCGGGATTCCGACCGCCGGAGAAGAGGGCTCGAAGGCGGTTGTTGGCGTTGAGCTTGCTATTCCGAATCAAAATCGAAATCCCACTTCTCAGGGCGATGCTTTAGCGGACCTTGAATGGGTTTCTCAATTCGTCGATGATTCTGGCTCGGAATATTCCTGCGCCGCCGTGTCTTTGAACCGCTCCAAACCGGAAAAGAAACTCACCGGAGCTGTAATTTCGTGTTTGCCGACGTCTTTCCCGGTGAGACCGAGGACGAAAAGGCCGAGACAATCTCGTCAAGCGAAATCCACCAGTTCTTCTCTCAACCAATCGTCGTCGTCGTCGTCCTTGTCTTCGTCCTCCGGCGTTTCCTCCGCCGCACCTTGGTTCATCTTCTCCGACGCCGGCGAGAACGTGGACTATTTGAACGTCTCCGGCCAGCCAACGAAGAAGCAGAGGAAAAAGTCGTCGGCGGCGGCGGCGGTTCTTCAACCCGTCGGTCCGACCGGTCAGATTCCGCGGCGGTGCAGCCATTGTCTTGTTCAGAGGACCCCACAGTGGCGGACCGGTCCAAACGGGGCCAAAACACTCTGTAACGCTTGTGGGGTCCGGTATAAATCCGGTCGCCTCTTCCCGGAGTATAGACCGGCGCTGAGTCCCACTTTTTGCAGCGGTATTCACTCGAACAGTCATCGGAAAGTGCTTGAAATGAGGAAGACGAAAGAGGTCCCTGAACCGGCGTCCGACTTGGCCCCTATGGTTCCGAGCATTTGTTTCGGTGGTTTGGTTGTAGAAAAAATGGAGTGTTTGGAGGCTAAGGCTTTGAAATCGAGTTTCCACTGGGAATTAGCCATGAAATTTGCTCAACCAGATGCTATGGTGGAGGAAGGTGGGTGTTCGAACGGAGCTGATCTCGTCGCCGGCGAGGATTTTGAGGTCGACGAGTTTTTGAACTTCTCTAATGGAGATTTTGAACATGGGTCTGCTTTGAGAGTTCAAGAAGATGACGATTACGAAGAGTTTGAGAAAAATCGGCTCTCTGTTTCGCCGTATTCGAACCAGTCCGGCGGGATTCCGACCGCCGGAGAAGAGGGCTCGAAGGCGGTTGTTGGCGTTGAGCTTGCTATTCCGAATCAAAATCGAAATCCCACTTCTCAGGGCGATGCTTTAGCGGACCTTGAATGGGTTTCTCAATTCGTCGATGATTCTGGCTCGGAATATTCCTGCGCCGCCGTGTCTTTGAACCGCTCCAAACCGGAAAAGAAACTCACCGGAGCTGTAATTTCGTGTTTGCCGACGTCTTTCCCGGTGAGACCGAGGACGAAAAGGCCGAGACAATCTCGTCAAGCGAAATCCACCAGTTCTTCTCTCAACCAATCGTCGTCGTCGTCGTCCTTGTCTTCGTCCTCCGGCGTTTCCTCCGCCGCACCTTGGTTCATCTTCTCCGACGCCGGCGAGAACGTGGACTATTTGAACGTCTCCGGCCAGCCAACGAAGAAGCAGAGGAAAAAGTCGTCGGCGGCGGCGGCGGTTCTTCAACCCGTCGGTCCGACCGGTCAGATTCCGCGGCGGTGCAGCCATTGTCTTGTTCAGAGGACCCCACAGTGGCGGACCGGTCCAAACGGGGCCAAAACACTCTGTAACGCTTGTGGGGTCCGGTATAAATCCGGTCGCCTCTTCCCGGAGTATAGACCGGCGCTGAGTCCCACTTTTTGCAGCGGTATTCACTCGAACAGTCATCGGAAAGTGCTTGAAATGAGGAAGACGAAAGAGGTCCCTGAACCGGCGTCCGACTTGGCCCCTATGGTTCCGAGTTACTAA 2109 53.25 MRGICFGGLVVEKMECLEAKALKSSFHWELAMKFAQPDAMVEEGGCSNGADLVAGEDFEVDEFLNFSNGDFEHGSALRVQEDDDYEEFEKNRLSVSPYSNQSGGIPTAGEEGSKAVVGVELAIPNQNRNPTSQGDALADLEWVSQFVDDSGSEYSCAAVSLNRSKPEKKLTGAVISCLPTSFPVRPRTKRPRQSRQAKSTSSSLNQSSSSSSLSSSSGVSSAAPWFIFSDAGENVDYLNVSGQPTKKQRKKSSAAAAVLQPVGPTGQIPRRCSHCLVQRTPQWRTGPNGAKTLCNACGVRYKSGRLFPEYRPALSPTFCSGIHSNSHRKVLEMRKTKEVPEPASDLAPMVPSICFGGLVVEKMECLEAKALKSSFHWELAMKFAQPDAMVEEGGCSNGADLVAGEDFEVDEFLNFSNGDFEHGSALRVQEDDDYEEFEKNRLSVSPYSNQSGGIPTAGEEGSKAVVGVELAIPNQNRNPTSQGDALADLEWVSQFVDDSGSEYSCAAVSLNRSKPEKKLTGAVISCLPTSFPVRPRTKRPRQSRQAKSTSSSLNQSSSSSSLSSSSGVSSAAPWFIFSDAGENVDYLNVSGQPTKKQRKKSSAAAAVLQPVGPTGQIPRRCSHCLVQRTPQWRTGPNGAKTLCNACGVRYKSGRLFPEYRPALSPTFCSGIHSNSHRKVLEMRKTKEVPEPASDLAPMVPSY 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4752379 4755359 + Cp4.1LG16g02750.1 Cpe16g00276 482651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00276 702 ProSitePatterns GATA-type zinc finger domain. 621 646 IPR000679 GO:0006355|GO:0043565
Cpe16g00276 702 MobiDBLite consensus disorder prediction 530 568 - -
Cpe16g00276 702 Pfam GATA zinc finger 621 654 IPR000679 GO:0006355|GO:0043565
Cpe16g00276 702 Pfam GATA zinc finger 272 305 IPR000679 GO:0006355|GO:0043565
Cpe16g00276 702 SMART GATA_3 266 316 IPR000679 GO:0006355|GO:0043565
Cpe16g00276 702 SMART GATA_3 615 665 IPR000679 GO:0006355|GO:0043565
Cpe16g00276 702 MobiDBLite consensus disorder prediction 181 219 - -
Cpe16g00276 702 CDD ZnF_GATA 620 677 IPR000679 GO:0006355|GO:0043565
Cpe16g00276 702 PANTHER GATA TRANSCRIPTION FACTOR 364 702 - -
Cpe16g00276 702 MobiDBLite consensus disorder prediction 195 219 - -
Cpe16g00276 702 PANTHER GATA TRANSCRIPTION FACTOR 364 702 - -
Cpe16g00276 702 PANTHER GATA TRANSCRIPTION FACTOR 15 352 - -
Cpe16g00276 702 Gene3D - 614 687 IPR013088 GO:0006355|GO:0008270
Cpe16g00276 702 Gene3D - 265 338 IPR013088 GO:0006355|GO:0008270
Cpe16g00276 702 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 267 329 - -
Cpe16g00276 702 PANTHER GATA TRANSCRIPTION FACTOR 15 352 - -
Cpe16g00276 702 ProSiteProfiles GATA-type zinc finger domain profile. 270 302 IPR000679 GO:0006355|GO:0043565
Cpe16g00276 702 ProSitePatterns GATA-type zinc finger domain. 272 297 IPR000679 GO:0006355|GO:0043565
Cpe16g00276 702 ProSiteProfiles GATA-type zinc finger domain profile. 619 651 IPR000679 GO:0006355|GO:0043565
Cpe16g00276 702 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 616 678 - -
Cpe16g00276 702 MobiDBLite consensus disorder prediction 544 568 - -
Cpe16g00276 702 CDD ZnF_GATA 271 328 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00276 - - - cmos:111448191 631.713
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01292 Cpe16g00276 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00550 Cpe-Chr14:3491573 Cpe16g00276 Cpe-Chr16:4752379 1.56E-52 dispersed
Cpe16g00276 Cpe-Chr16:4752379 Cpe02g01690 Cpe-Chr2:13929892 1.09E-35 dispersed
Cpe16g00276 Cpe-Chr16:4752379 Cpe05g01292 Cpe-Chr5:9021238 4.21E-165 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g28 Blo02g00646 . Bda06g00964 Bda08g00959 Bpe07g00497 . Bma05g00426 . . . Cma02g00364 Cma20g00811 Car02g00231 Car20g00695 . . . . . . . . . . . . . . . . . Cone12ag1182 Cone8ag1227 . . Lsi10g00416 . . . . . . . . Bpe05g00319 . . . Cmo02g00367 Cmo20g00819 . . . . Cpe16g00276 Cpe05g01292 Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa02g01309 . Cme11g00170
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003888 3 2 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 3 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50697 PF00320 GATA 2.10E-14 CL0167 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00276 Cpe_Chr16 FPKM 2.430325 2.737851 18.150726 19.437338 18.501328 16.460426 20.558441 0.0 0.0 0.0