Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00281 ATGGCGGCCGCCACCACCACCCTCACCCTCCCTTCTCTCTCTTCTTCTTCTTCTTCTTCATTTCTCTCTCCTCCCAACCCCTCCGTTCAAACCCCTCTCTCTCTGTCTTCTAAAACCCTCCCTAAATCCTACTTCCCCTATTCTCACTCCCACTCCTTCTCCCTTTCCAATCCCCCTAAACCCCTCCTCCTCGCCGCCGCGGCCAAAAGCCCCATCTCCGAGTTCTTCTCCGGCGACTATTTAGACGACAAGCCTCGTGAGGAGTGCGGCGTTGTCGGAATCTATGGCGACCCCGAGGCTTCTCGCCTCTGCTATTTGGCTCTCCATGCGCTCCAACATCGCGGTCAAGAAGGCGCTGGAATCGTCTCTGTTAACGAAAACGTTCTCCAGTCCGTCACCGGCGTTGGCCTCGTCTCTGAGGTGTTCAGTGAAGCCAAACTTGATCAATTGCCTGGCGATTCTGCTATTGGACATGTTCGTTACTCCACTGCTGGATCTTCTATGCTTAAGAATGTTCAGCCCTTTGTTGCTGGTTACCGATTTGGCTCCGTTGGGGTTGCTCATAATGGTAATTTGGTTAATTATCGTTCTCTTAGAGCTAAGCTTGAAGATACTGGTTCCATTTTCAATACTAGTTCTGATACTGAAGTTGTTCTTCACCTTATTGCGATTTCTAAGCATAGACCTTTCTTGTTGAGGATTGTTGATGCTTGTGAACAGCTTGAAGGGGCTTATTCTATGGTTTTCATTACAGAAGATAAATTGGTAGCTGTTCGTGATCCTTTTGGTTTTAGGCCTTTGGTTATGGGTAGGAGGAGTAATGGGGCTGTTGTGTTTGCTTCTGAAACTTGTGCTCTTGATTTAATTGAAGCTACATATGAGAGAGAAGTGTTCCCTGGGGAAGTTGTGGTGGTTGATAAAAATGGTATTCAGTCCCTTTGTTTAATGGCTCATCCACAGCCTAAATCTTGCATATTTGAACACATATACTTTGCTCTCCCGAACTCCGTTGTTTATGGTCGTTCTGTCTACGAATCCCGCCGAATATTCGGGGAGATACTTGCCACCGAAGCCCCTGTTGATTGTGATGTTGTGATAGCTGTTCCAGATTCAGGAGTAGTGGCTGCACTTGGCTATGCAGCCAAAGCTGGGGTGGCCTTCCAACAAGGCCTCATAAGGTCACACTATGTGGGGAGGACATTCATCGAGCCATCGCAGAAGATTCGTGACTTTGGCGTGAAGCTGAAGCTATCGCCGGTTCGAGCAGTGTTGGAAGGGAAGAGAGTAGTGGTTGTTGATGACTCAATTGTTAGAGGCACCACATCTTCAAAGATTGTGAGATTGTTAAAGGAAGCAGGGGCAAAAGAAGTGCATATGAGGATAGCCTGCCCTCCAATTATAGGATCATGTTACTATGGAGTTGATACACCAAGCTCTGAAGAACTGATATCCAACAGGATGAGTGTGGAGGAAATAAGGGAGTTTATAGGGTCTGATTCACTTGCTTTTCTGCCATTTGATAGCTTGAAGAAGCTTTTGGGCAGTGAATCTCCAAACTATTGCTATGCATGCTTTTCAGGCAACTACCCAGTTGAGCCAAGAGAGATCAAAGTGAAAAGGGTAGGAGATTTCGTTGATGATGGCTTGAATGGGAGCTTGGAATCCATTGATGGAGGATGGGTTCAAGCCAATAGAAACCAGAATCTTGATAATCATCCCACAGTGGAGAAAGTTGGGGGTATCTGA 1746 46.79 MAAATTTLTLPSLSSSSSSSFLSPPNPSVQTPLSLSSKTLPKSYFPYSHSHSFSLSNPPKPLLLAAAAKSPISEFFSGDYLDDKPREECGVVGIYGDPEASRLCYLALHALQHRGQEGAGIVSVNENVLQSVTGVGLVSEVFSEAKLDQLPGDSAIGHVRYSTAGSSMLKNVQPFVAGYRFGSVGVAHNGNLVNYRSLRAKLEDTGSIFNTSSDTEVVLHLIAISKHRPFLLRIVDACEQLEGAYSMVFITEDKLVAVRDPFGFRPLVMGRRSNGAVVFASETCALDLIEATYEREVFPGEVVVVDKNGIQSLCLMAHPQPKSCIFEHIYFALPNSVVYGRSVYESRRIFGEILATEAPVDCDVVIAVPDSGVVAALGYAAKAGVAFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVRAVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIACPPIIGSCYYGVDTPSSEELISNRMSVEEIREFIGSDSLAFLPFDSLKKLLGSESPNYCYACFSGNYPVEPREIKVKRVGDFVDDGLNGSLESIDGGWVQANRNQNLDNHPTVEKVGGI 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4804185 4805930 - Cp4.1LG16g02790.1 Cpe16g00281 482656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00281 581 TIGRFAM purF: amidophosphoribosyltransferase 89 530 IPR005854 GO:0004044|GO:0009113
Cpe16g00281 581 Pfam Glutamine amidotransferase domain 169 286 IPR017932 -
Cpe16g00281 581 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 89 308 IPR017932 -
Cpe16g00281 581 Gene3D - 348 512 IPR029057 -
Cpe16g00281 581 Pfam Phosphoribosyl transferase domain 346 459 IPR000836 -
Cpe16g00281 581 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 2, CHLOROPLASTIC 24 561 - -
Cpe16g00281 581 CDD PRTases_typeI 351 462 IPR000836 -
Cpe16g00281 581 CDD GPATase_N 89 338 IPR035584 -
Cpe16g00281 581 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 89 530 IPR029055 -
Cpe16g00281 581 Hamap Amidophosphoribosyltransferase [purF]. 88 529 IPR005854 GO:0004044|GO:0009113
Cpe16g00281 581 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 89 312 IPR029055 -
Cpe16g00281 581 MobiDBLite consensus disorder prediction 1 34 - -
Cpe16g00281 581 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 24 561 - -
Cpe16g00281 581 SUPERFAMILY PRTase-like 324 535 IPR029057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00281 K00764 purF, PPAT; amidophosphoribosyltransferase [EC:2.4.2.14] - csv:101203840 970.304
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01298 Cpe16g00281 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00281 Cpe-Chr16:4804185 Cpe19g00762 Cpe-Chr19:5846721 1.05E-08 dispersed
Cpe16g00281 Cpe-Chr16:4804185 Cpe05g01298 Cpe-Chr5:9060532 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g59 Blo02g00658 . . Bda08g00971 . . Bma05g00406 . . . Cma02g00358 Cma20g00802 Car02g00225 Car20g00687 . . . . . . . . . . . . . . . . . Cone12ag1199 Cone8ag1246 Cone3ag1203 . Lsi10g00425 . Chy11g00327 . . . . . . . . . Sed01g0252 Cmo02g00360 Cmo20g00810 . . . . Cpe16g00281 Cpe05g01298 Bhi10g01929 Tan05g1228 Cmetu11g1361 . Hepe08g0964 . . . . . . . . . . Csa02g01318 . Cme11g00452
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe16g00281 CST 82 562 PRT Gene Family AT2G16570 84.5 2.5e-240 828.6
Cpe05g01298 CST 70 556 PRT Gene Family AT2G16570 83.2 2.7e-239 825.1
Cpe05g01298 CST 72 556 PRT Gene Family AT4G34740 85.0 1.1e-243 839.7
Cpe16g00281 CST 82 562 PRT Gene Family AT4G34740 85.3 1.7e-241 832.4
Cpe16g00281 CST 25 535 PRT Gene Family AT4G38880 69.5 3.0e-200 695.3
Cpe05g01298 CST 69 529 PRT Gene Family AT4G38880 73.0 1.9e-194 676.0
Cpe01g02140 . 1 170 PRT Gene Family AT1G71750 59.9 2.3e-60 229.2
Cpe06g00842 . 40 468 PRT Gene Family AT1G55810 87.2 1.1e-219 759.6
Cpe02g01427 . 19 469 PRT Gene Family AT1G55810 73.2 2.2e-191 665.6
Cpe04g00495 . 19 459 PRT Gene Family AT1G55810 72.5 6.8e-185 644.0
Cpe06g00842 . 65 467 PRT Gene Family AT3G27440 77.2 1.1e-184 643.3
Cpe02g01427 . 80 469 PRT Gene Family AT3G27440 74.6 1.4e-171 599.7
Cpe04g00495 . 80 459 PRT Gene Family AT3G27440 74.0 4.6e-167 584.7
Cpe02g01427 . 1 469 PRT Gene Family AT3G27190 85.5 4.1e-236 814.3
Cpe04g00495 . 1 459 PRT Gene Family AT3G27190 84.6 6.8e-231 797.0
Cpe06g00842 . 51 467 PRT Gene Family AT3G27190 79.9 2.8e-200 695.3
Cpe10g00910 . 4 266 PRT Gene Family AT3G53900 61.0 1.2e-92 337.0
Cpe06g00842 . 30 468 PRT Gene Family AT4G26510 81.7 4.3e-222 767.7
Cpe02g01427 . 11 469 PRT Gene Family AT4G26510 74.3 8.4e-202 700.3
Cpe04g00495 . 7 459 PRT Gene Family AT4G26510 74.2 1.1e-196 683.3
Cpe02g01427 . 1 469 PRT Gene Family AT5G40870 86.0 7.0e-236 813.5
Cpe04g00495 . 1 459 PRT Gene Family AT5G40870 84.6 3.1e-231 798.1
Cpe06g00842 . 51 470 PRT Gene Family AT5G40870 78.8 1.4e-199 693.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005155 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00281 Cpe_Chr16 FPKM 3.365136 3.510065 0.82135 0.994046 0.0 0.0 0.0 1.198436 1.570913 1.414691