Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00291 GTCACCTTCTCTTCCAAGCCTCAATCACTGATGTTCAATCCATGTCTTCTTGTCAATTCTTCTTCCTCCTTCTCCTACTCTCGGCTCCGCTTCGTTCGCCGGCAATTCCTTGGCGGTGGTCATAATCTCCGCCCGCCAGATTCCTTGCGCACTCGTCGGAGGTGCAGGAAGGTTGGCTTGTTTGTTCAGTCTCCGAGGTACATTTTCCGAGCTACGTTGAGTTCGAATCCGGCTCTCATCGTTGTTGCTGTGGTTACCTTCTCTGCTGTCTCGTTCATCTACATGCAACTCAGTAGGAGGAAGAAGAATGCGGTTGAGCGTTCCCAATCTACAAAGCTTGCCTTATCTCAACTAGGTAGAGACATCAACTGGTCTGCCGATGGTGAGATAATGGGCTTTAGGGAGCACCATGGCGTCTTTTTAGAGCAGAACATAAGCATTAAGGATAGAACTGAAGAGAGAAGTTACTCTGGGGAAGAAGAGACTGTTCTGCAGCTTCAAAAATCTGTTCTGTCACGTGAGGCCAGTGTCACCGAATCATTGCAGCCATCTGTTTCTGAAGTTACTACTTCTAAGGATAGTGATTCTCTGTTTTCAGATGAAAGTGAAGCGGCAGATCTTTCTCTTCTTTCTGATATGTTTGAACCTCGGGTCCTACAGCCTCTTATGTTTCCCAATGACATGACTGACTTACAACTGAACGGATCTCATGTCAAATCCCACTCTGACTTGCCTGTTTTGGTTGATGCAACGGAGCTTCCACCTGTTGCTGGTCCTTTATATAGTGTATATAATCCAGTGACTCAACATTTCCAAGCAGATGGTGAGCCTGTAAAAGAGGAAAAATTTACCAGTTCCAACTTTCTAATTGAAGAACCGGCTAGAGAAGATATTTACATGTTCTATGAAGACACAGAGTCAAGTAGTCAAACGGAAACTTCTCGAACTTCTCATCTATACAACCAAAATTTTTCTTCAGTGATGATTAATGGTGTCTCGAGAGGAGCAGAATTAGTACCAGAGGATTCTCTGCACATTGCAGGGTATGTTCAAAGAAATGTACCTGTTCCATATAAGGAAGGTTCTTCAGGAAACAGGGGGAAAGAACCCAGTCTGCATAGAGGAAAAGTTGTGAATGGGTTGCCCTATCCAAATGGGAAGCATGTTCATTACAAAAATCTTCATGTAGATCAATTTAAATCCTACAATCAATGCCTGAAAGGTGGAAGGCAATGTATCAAAATACTTCAAGACATGGAAAAAGAAGGCTTATTGGATATGAATAAGATTTATCATGGGAAGTTTTTCAATATTTGCAAGAGTAAAAAGGCTGTTCAGGAAGCTTTTCAGTTCACCATACTTATTCCAAATCCCACGTTGAGTACATTTAACATGCTCATGTCTGTATGTGCAAGTTCTCAAGATTCTGACAGCGCTTTTCAAGTCATGCGGCTTGTTCAGGAGGCTGGAATGAGAGCAGATTGCAAACTATACACTACTTTAATCTCAACATGTGGCAAAAGTGGAGAAGTGGATGCAATGTTTGAAGTATTCCATCGAATGGTTAATACTGGAGTGGAACCTAATGTTCACACATATGGGGCACTTATTGATGGTTGTGCAAGAGCAGGTCAAGTGGCCAAGGCATTTGGCGTGTATGGAATAATGAGGTCAAAGAACGTGAAGCCAGACAGAGTTGTATTCAATGCACTTATAACTGCATGTGGTCAGTCAGGAGCGGTGGATCGTGCTTTTGATGTGCTGGCAGAAATGGGGGCTGAGCTACATCCTGTAGAGCCTGATCATATTACAATTGGTGCTTTGATCAAGGCATGTGCAAATGCTGGTCAGGTTGATCGGGCAAGAGAAGTGTATAAGATGATCCATGATTGTAAGATTAAGGGCACACCAGAGGTTTACACCATTGCTGTTAATTGTTGCAGTCAATCTTGTGATTGGGACTTTGCTTCCAGTGTATATCAAGATATGACCAAGAATGGAGTACAACCTGATGAGATTTTTCTCAGTGCGTTAATAGATGTTTCAGGCCATGCTGGTGAGCTGGATGCTGCCTTTGAAATCTTAGGAGAAGCCAAGACACTGGGGTTAAGTGTTGGCATTGTGTCATATAGTTCGCTGATGGGTGCCTGTAGCAATGCTAAGAACTGGCAGAAGGCGTTGGAACTGTATGAGGATCTCAAGTCTATGAAATTGAGGCCAACTGTTTCAACTGTGAATGCACTAATAACTGCACTGTGTGATGGGAAACAACTACAAATGGCTATGGATATTCTAACTGAAATGAAGGGATTAGGACTCTACCCAAACAACATTACATACTCCATACTTACGGCAGCAAGTGAAAGGAATGACGATTTAGAAATTGCCATCATGCTCCTCTCTCAAGCCAAAGAGGATGGGATTGTGCCAACCTTAACTATGTATAAGTGCATAATTGGCATGTGTTTACGAAGAACTGCAGAGCCCTCTGCCCTTGATAGATCACTTTTGTCACATGACTCTAAACTGCCTCAAGTCAATACACAGGCCTTAATGGTGTATCGGGAAATAATTGAAGCCGGAATTGTTCCTAGCATTGAAGTTTTATCTCAAGTTTTGGGGTGCTTGCAGATTCCTCATGATCCCGCCTTAAAAAGCAGACTCATAGAAAACATAGGAGTATGTGCTGACTCATCAAGATCTTCAAATCTCTGCTCCTTGATAGATGGCTTTGGTGAATATGACCCTCGCGCATTTTCACTGTTGGAGGAAGCTGCTTCACTTGGAGTTGCTCCTTTTGTATCCCTCAAAGGAAGTCCTATTATTGTAGATGTCAAGGAGTTGCACATTCATACAGCTGAGGTTTACCTCTTGACAGTTTTGAAAGGTCTCAAACATCGGCTTGCCGCTGGTTCAAGGTTACCGAACATAATGATCTTAATGCCAAATGAGACGACGCAAGTTCTCTCTTCCAAGGGGGAGAGAACCATTAACCTTGCGGGAAGACTTGGACTACCCTACCAGGGAAATGAATCCAGTGGAAAAATCAGAATCAATGGTTTAGCCTTGAGAAGATGGTTACAGCCAAAACTCTCCAATTCTCTAAGTGGAAAACCAGGAGAGTTCAGCTCATTTCAGTCACGTCTAAGAGAAGGAATAAGCCATCAGCAG 3171 43.05 VTFSSKPQSLMFNPCLLVNSSSSFSYSRLRFVRRQFLGGGHNLRPPDSLRTRRRCRKVGLFVQSPRYIFRATLSSNPALIVVAVVTFSAVSFIYMQLSRRKKNAVERSQSTKLALSQLGRDINWSADGEIMGFREHHGVFLEQNISIKDRTEERSYSGEEETVLQLQKSVLSREASVTESLQPSVSEVTTSKDSDSLFSDESEAADLSLLSDMFEPRVLQPLMFPNDMTDLQLNGSHVKSHSDLPVLVDATELPPVAGPLYSVYNPVTQHFQADGEPVKEEKFTSSNFLIEEPAREDIYMFYEDTESSSQTETSRTSHLYNQNFSSVMINGVSRGAELVPEDSLHIAGYVQRNVPVPYKEGSSGNRGKEPSLHRGKVVNGLPYPNGKHVHYKNLHVDQFKSYNQCLKGGRQCIKILQDMEKEGLLDMNKIYHGKFFNICKSKKAVQEAFQFTILIPNPTLSTFNMLMSVCASSQDSDSAFQVMRLVQEAGMRADCKLYTTLISTCGKSGEVDAMFEVFHRMVNTGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAELHPVEPDHITIGALIKACANAGQVDRAREVYKMIHDCKIKGTPEVYTIAVNCCSQSCDWDFASSVYQDMTKNGVQPDEIFLSALIDVSGHAGELDAAFEILGEAKTLGLSVGIVSYSSLMGACSNAKNWQKALELYEDLKSMKLRPTVSTVNALITALCDGKQLQMAMDILTEMKGLGLYPNNITYSILTAASERNDDLEIAIMLLSQAKEDGIVPTLTMYKCIIGMCLRRTAEPSALDRSLLSHDSKLPQVNTQALMVYREIIEAGIVPSIEVLSQVLGCLQIPHDPALKSRLIENIGVCADSSRSSNLCSLIDGFGEYDPRAFSLLEEAASLGVAPFVSLKGSPIIVDVKELHIHTAEVYLLTVLKGLKHRLAAGSRLPNIMILMPNETTQVLSSKGERTINLAGRLGLPYQGNESSGKIRINGLALRRWLQPKLSNSLSGKPGEFSSFQSRLREGISHQQ 1057
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4897112 4907296 - Cp4.1LG16g02900.1 Cpe16g00291 482666

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00291 1057 Pfam Pentacotripeptide-repeat region of PRORP 609 750 IPR033443 -
Cpe16g00291 1057 Pfam Pentacotripeptide-repeat region of PRORP 462 601 IPR033443 -
Cpe16g00291 1057 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 459 493 IPR002885 -
Cpe16g00291 1057 TIGRFAM PPR: pentatricopeptide repeat domain 708 741 IPR002885 -
Cpe16g00291 1057 TIGRFAM PPR: pentatricopeptide repeat domain 639 672 IPR002885 -
Cpe16g00291 1057 TIGRFAM PPR: pentatricopeptide repeat domain 497 530 IPR002885 -
Cpe16g00291 1057 TIGRFAM PPR: pentatricopeptide repeat domain 604 634 IPR002885 -
Cpe16g00291 1057 TIGRFAM PPR: pentatricopeptide repeat domain 531 564 IPR002885 -
Cpe16g00291 1057 TIGRFAM PPR: pentatricopeptide repeat domain 744 776 IPR002885 -
Cpe16g00291 1057 TIGRFAM PPR: pentatricopeptide repeat domain 462 495 IPR002885 -
Cpe16g00291 1057 Gene3D Tetratricopeptide repeat domain 716 832 IPR011990 GO:0005515
Cpe16g00291 1057 Gene3D Tetratricopeptide repeat domain 404 539 IPR011990 GO:0005515
Cpe16g00291 1057 Gene3D Tetratricopeptide repeat domain 540 705 IPR011990 GO:0005515
Cpe16g00291 1057 Pfam Pentatricopeptide repeat domain 764 822 IPR002885 -
Cpe16g00291 1057 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 741 775 IPR002885 -
Cpe16g00291 1057 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 167 1057 - -
Cpe16g00291 1057 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 601 635 IPR002885 -
Cpe16g00291 1057 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 564 594 IPR002885 -
Cpe16g00291 1057 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 529 563 IPR002885 -
Cpe16g00291 1057 MobiDBLite consensus disorder prediction 357 376 - -
Cpe16g00291 1057 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 636 670 IPR002885 -
Cpe16g00291 1057 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 494 528 IPR002885 -
Cpe16g00291 1057 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 706 740 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00291 - - - csv:101204147 1777.3
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01307 Cpe16g00291 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00291 Cpe-Chr16:4897112 Cpe17g00741 Cpe-Chr17:5864632 3.78E-27 dispersed
Cpe19g00396 Cpe-Chr19:3536531 Cpe16g00291 Cpe-Chr16:4897112 8.45E-16 transposed
Cpe16g00291 Cpe-Chr16:4897112 Cpe05g01307 Cpe-Chr5:9160289 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g85 . . . Bda08g00972 . . Bma05g00408 . . . Cma02g00333 Cma20g00774 Car02g00214 Car20g00677 . . . . . . . . . . . . . . . . . . . . . Lsi10g00458 . Chy11g00302 . . . . . . . . . Sed01g0228 Cmo02g00330 Cmo20g00774 . . . . Cpe16g00291 Cpe05g01307 Bhi10g01901 Tan05g1200 Cmetu11g2217 . Hepe08g0952 . . . . . . . . . . Csa02g01347 . Cme11g00424
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008629 1 2 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00291 Cpe_Chr16 FPKM 0.0 0.0 0.947403 0.33814 0.0 0.0 0.0 0.0 0.0 0.0