Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00292 ATGCCATCAATGGCGGCCACTGGACCTGACCAGGAGGAGGAGCTTGCTTTGCCGGTTGACGACGGAGGAGGCAGCTCCGGTGGAGATCACGCCTCCTTTCTCTCCACATTTCTTCTTTACATTGGTGCCCATGAGCTTTTCTCGCCACAGATGTGGAAAGCGGCCATGACAGAGTTCGTAGCAACAGCCTTGCTGGTATTTTGCTTAACAACCTCCATCGTCTCGTGCTTGAAATCCAACGAATCAGATCCAAAGCTCTTAATCCCAATCGCCGTTTTCATCATCCTCTTCCTCTTCCTCCTCGTCACTTTCCCTCTCTCCGGCGGTTTTTTGAGCCCTATTTTCGCCTTCATCGCCGCCCTAAGAGGCGTCATAACCTTCACTCGCGCCGCCGTCTACATTCTCGCTCAATGTCTCGGCTCCATCATAGCCTTTCTCCTAATCAAGGACGCAATGAGTCCCGATGTTGCCGAAAAGTACTCTCTCGGCGGCTGCACCATCCACGGCACCGGCGACACCCCTGGCATCGGTATCGCCACGGCTCTGGTTCTCGAATTCGCCTGCACCTTCGTGGTTCTCTATGTCGGAGTAACGGTGGTGCTCGACCAGAAGATGAGCGAGCGGCTCGGTCTGCCGATGGTGTGCGGGATGATCGCGGGGAGTTCGGCGGTGGCGGTTTTCGTCTCCACCACGATTACAGGGCGGGCTGGGTACGGTGGGGTGGGGCTGAATCCGGCGAGGTGTTTAGGGCCGGCGGTGTTGAGAGGGGGACGGTTGTGGGAAGGGCATTGGGTGTTTTGGGTGGGGCCGTTTGCGGCGTGTGTGGCTTATTATGGATTTTCTGTCAATTTGCCGACGGCGCCGTTGGTTGGAGCGAAGGGGGATATCGGGATTTTGAAAATGGCCGGCAGTTGTTGGCGGTGGCGCCGCCGCCGGAGGTTGGAAGAAAAGTTAGGGCAAAATGTTTAA 969 56.55 MPSMAATGPDQEEELALPVDDGGGSSGGDHASFLSTFLLYIGAHELFSPQMWKAAMTEFVATALLVFCLTTSIVSCLKSNESDPKLLIPIAVFIILFLFLLVTFPLSGGFLSPIFAFIAALRGVITFTRAAVYILAQCLGSIIAFLLIKDAMSPDVAEKYSLGGCTIHGTGDTPGIGIATALVLEFACTFVVLYVGVTVVLDQKMSERLGLPMVCGMIAGSSAVAVFVSTTITGRAGYGGVGLNPARCLGPAVLRGGRLWEGHWVFWVGPFAACVAYYGFSVNLPTAPLVGAKGDIGILKMAGSCWRWRRRRRLEEKLGQNV 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4908103 4910585 - Cp4.1LG16g02880.1 Cpe16g00292 482667

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00292 322 MobiDBLite consensus disorder prediction 1 24 - -
Cpe16g00292 322 Gene3D Glycerol uptake facilitator protein. 39 285 IPR023271 -
Cpe16g00292 322 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 31 308 - -
Cpe16g00292 322 PANTHER AQUAPORIN-LIKE 31 308 - -
Cpe16g00292 322 PRINTS Major intrinsic protein family signature 53 72 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe16g00292 322 PRINTS Major intrinsic protein family signature 92 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe16g00292 322 PRINTS Major intrinsic protein family signature 129 148 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe16g00292 322 PRINTS Major intrinsic protein family signature 184 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe16g00292 322 PRINTS Major intrinsic protein family signature 225 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe16g00292 322 PRINTS Major intrinsic protein family signature 264 284 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe16g00292 322 Pfam Major intrinsic protein 47 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe16g00292 322 SUPERFAMILY Aquaporin-like 51 276 IPR023271 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00292 K09866 AQP4; aquaporin-4 - csv:101208503 435.647
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00292 Cpe-Chr16:4908103 Cpe01g01051 Cpe-Chr1:6202540 1.50E-21 dispersed
Cpe16g00292 Cpe-Chr16:4908103 Cpe03g00205 Cpe-Chr3:1022954 9.37E-22 transposed
Cpe16g00292 Cpe-Chr16:4908103 Cpe01g01049 Cpe-Chr1:6196921 1.76E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g90 . . . . Bpe07g00491 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo20g00773 . . . . Cpe16g00292 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010832 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00292 Cpe_Chr16 FPKM 1.065574 1.52011 1.235689 1.299423 1.309788 1.009808 1.452824 4.35582 3.554996 4.266411