Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00305 ATGGCCGGCATTGTCAAGGAGATCCTGGCAAGGCCCATCCAACTGGCCGACCAGGTGACCAAAAACGCCGATTGCGCCCAAACCTTCAAGCAAGAATGCATCGAACTCAAAACCAAAACCGAAAAACTCGCCATCCTCCTCCGCCAAGCCGCCCGCGCCAGCAACGAGCTTTACGAGCGTCCCACCCGCCGCATCATCGACGACACCGAGCAAGTTCTTGACAAGGCCTTCACCCTCGTCATGAAATGTCGTTCCAATGGTATAATGAAACGTATGTTCACCATTATCAACGCTGCCTCCTTCAAAAAAATCTCTACCCAGCTCGAAAATTCCATCGGCGATGTCTCTTGGCTTCTCCGCGTCTCCATCCCCGCGGAGGATCGCGACGATGAATACCTCGGCCTTCCTCCCATCGCTTCTAATGAACCCATTTTGGGTCTCATTTGGGAACAGGTCGCGATTCTTCACACGGGTACTTTAGAAGAACGATCCGACGCTGCCGCTTCTCTGGCATCCTTAGCTCGAGACAACGATCGTTACGGGAAATTGATTATTGAAGAAGGCGGCGTTGTGCCGCTTCTGAAATTGGCTAAGGAAGGGCGAATGGAAGGTCAAGAATACGCCGCGAGGGCCATTGGGTTATTGGGTCGAGACTCGGAGAGCGTGGAACAGATTGTGAATTGTGGGGTGTGCTCTGTTTTCGCGAAAATCCTCAAAGATGGGCATATGCAGGTTCAATGCGTGGTGGCTTGGGCTGTCTCGGAAATGGCGACTTACCATCCCAAATGTCAAGACCATTTCGCTCAAAACAATGTGATTCGGCTTCTGGTTAGCCATCTCGCCTTCGAGACCATCCAAGAACATAGCCGCTACACCATTCCTTCCAAGCAATCGATTCATTCGGTGTTGATGGCTAATACGAATGGTTCCGAACATGGTGAAGACGAGTATAAACAAGTGAATCACCCAACTGGGAATCAATTGCCTAGCCAAATGCATAATGTAGTTACCGACACATTGTTTATGAAGAATCCTGTAAAGGGTCAGTCCAATACTCATGAATCACAAAACCCACAAAAGGGTAATCATCACAGCACTACGCGGCCGCACCACCACGCCGCACTGTCAGGGACTAGCATAAAGGGTAGGGAATACGAGGACCCTGCTACAAAGGCCCAAATGAAAGCCATGGCTGCTAGATCTCTATGGCAACTATGCAAAGGGAATGTTACCATTTGCCGCAACATAACAGAGTCGAGAGCTCTGTTATGCTTTGCAGTTCTATTAGAGACAGGTTCCGTGGATGTCAAGTACTATTCCGCCATGGCATTGATGGAAATCACCGCCGTCGCCGAGCAGAACGCCGAGCTTCGTCGATCTGGGTTCAAACCCACCTCCCCTGCCGCCAAGGCCGTCGTGGATCAGTTACTGAAAATCGTTGAGAGAGCGAATTGCGAGCTGCTGATGCCGTCGATCCAAGCGATTGGGCACTTGGCTAGGACGTTCAGAGCCACGGAGACCAGGATCATCGGGCCGCTGGTGAAGCTGCTGGATGAACGAGAAGCAGAGGTGTCAATGGAGGCGGTGATTGCACTGAACAAATTCGCGTGTACAGACAACTTCCTACATGAAAACCATTGCAAAGCGATCATAGAAGCGGGTGGAACGAAGCATCTAATCCAGTTGGTGTATTTTGGAGAACAAATGGTTCAAATTCCTTCGTTGATTCTGCTGTGTTACATAGCTTTACATGTTCCTGATAGTGAGACGCTAGCACAAGAAGAGGTACTGATAGTGCTGGAATGGTCTGCAAAACAGGCGCACTTAGTGGAAGAACCCACCATAGAAGGTCTGCTGCCAGAAGCTAAGAGTAGGTTGGAACTTTATCAGTCCAGAGGTTCGAGAGGATTTCATTGA 1917 50.08 MAGIVKEILARPIQLADQVTKNADCAQTFKQECIELKTKTEKLAILLRQAARASNELYERPTRRIIDDTEQVLDKAFTLVMKCRSNGIMKRMFTIINAASFKKISTQLENSIGDVSWLLRVSIPAEDRDDEYLGLPPIASNEPILGLIWEQVAILHTGTLEERSDAAASLASLARDNDRYGKLIIEEGGVVPLLKLAKEGRMEGQEYAARAIGLLGRDSESVEQIVNCGVCSVFAKILKDGHMQVQCVVAWAVSEMATYHPKCQDHFAQNNVIRLLVSHLAFETIQEHSRYTIPSKQSIHSVLMANTNGSEHGEDEYKQVNHPTGNQLPSQMHNVVTDTLFMKNPVKGQSNTHESQNPQKGNHHSTTRPHHHAALSGTSIKGREYEDPATKAQMKAMAARSLWQLCKGNVTICRNITESRALLCFAVLLETGSVDVKYYSAMALMEITAVAEQNAELRRSGFKPTSPAAKAVVDQLLKIVERANCELLMPSIQAIGHLARTFRATETRIIGPLVKLLDEREAEVSMEAVIALNKFACTDNFLHENHCKAIIEAGGTKHLIQLVYFGEQMVQIPSLILLCYIALHVPDSETLAQEEVLIVLEWSAKQAHLVEEPTIEGLLPEAKSRLELYQSRGSRGFH 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4960519 4962435 + Cp4.1LG16g02960.1 Cpe16g00305 482680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00305 638 SUPERFAMILY ARM repeat 153 597 IPR016024 -
Cpe16g00305 638 MobiDBLite consensus disorder prediction 345 383 - -
Cpe16g00305 638 Pfam Armadillo/beta-catenin-like repeat 219 257 IPR000225 GO:0005515
Cpe16g00305 638 Gene3D - 150 322 IPR011989 -
Cpe16g00305 638 PANTHER ARMADILLO REPEAT ONLY 1 1 638 - -
Cpe16g00305 638 Gene3D - 375 619 IPR011989 -
Cpe16g00305 638 SMART arm_5 218 258 IPR000225 GO:0005515
Cpe16g00305 638 SMART arm_5 176 217 IPR000225 GO:0005515
Cpe16g00305 638 SMART arm_5 409 449 IPR000225 GO:0005515
Cpe16g00305 638 SMART arm_5 543 583 IPR000225 GO:0005515
Cpe16g00305 638 Gene3D - 4 121 IPR036537 GO:0007166
Cpe16g00305 638 Coils Coil 36 56 - -
Cpe16g00305 638 PANTHER ARMADILLO REPEAT ONLY 4 1 638 - -
Cpe16g00305 638 MobiDBLite consensus disorder prediction 345 363 - -
Cpe16g00305 638 MobiDBLite consensus disorder prediction 308 329 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00305 - - - csv:101216019 1094.34
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01320 Cpe16g00305 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00032 Cpe-Chr11:165521 Cpe16g00305 Cpe-Chr16:4960519 4.05E-19 dispersed
Cpe09g01008 Cpe-Chr9:8911146 Cpe16g00305 Cpe-Chr16:4960519 3.18E-41 transposed
Cpe11g00031 Cpe-Chr11:164002 Cpe16g00305 Cpe-Chr16:4960519 9.54E-90 transposed
Cpe10g00667 Cpe-Chr10:3848663 Cpe16g00305 Cpe-Chr16:4960519 0 wgd
Cpe16g00305 Cpe-Chr16:4960519 Cpe19g00863 Cpe-Chr19:6372160 0 wgd
Cpe16g00305 Cpe-Chr16:4960519 Cpe05g01320 Cpe-Chr5:9264437 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g134 . . . . . . . . . . Cma02g00321 . Car02g00202 Car20g00666 . . . . . . . . . . . . . . . . . . . . . Lsi10g00476 . Chy11g00278 . . . . . . . . . Sed01g0209 Cmo02g00315 . . . . . Cpe16g00305 Cpe05g01320 Bhi10g01872 Tan05g1164 Cmetu11g2261 . Hepe08g0276 . . Cla02g01149 Cam02g1226 Cec02g1233 Cco02g1275 Clacu02g1206 Cmu02g1175 Cre02g1484 . Csa02g01370 . Cme11g00398
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008024 0 1 2 1 2 1 3 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00305 Cpe_Chr16 FPKM 349.215363 355.371735 325.174591 315.069702 669.205383 800.066711 632.769226 316.068329 320.942139 305.913696