Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00306 ATGCGAAGTGCTGTGTATTTCTCTCGCAACAAGGAAGGTAAAGTTCTTCCAATCCCATCAAAACCCCAATCTTATCGCTTTTCCTTCAATCTTCCAATGGATCGCTCACTCCTCCTCGCCACTCTTTTCACTCTTCTTCTTCTTCTCCCAGATGTTCAATCGACGTCTTTTAAGTTGATCAACAAGTGTCGGACCACGATTTGGCCGGGTCTGTTATCAGGCGCCAACACCCCCCAGCTTCCGACCACCGGCTTCGCCCTCCGCAGCGGCAAATCCAAGATCGTTCCGGTCCCGAAATCTTGGTCGGGTCGGTTATGGGCTCGGACCCTTTGTGGGTTAGATTCAGATGGGAAGTTCTCTTGTCTCACCGCCGATTGTGGATCGGGTAAAGTGGAGTGCGACGGCGGCGGTGCTAAACCACCGGCTACCTTGGCGGAGTTCACTCTCAACGGCGCCGATGGGCTTGATTTTTACGACGTCAGCTTGGTCGACGGTTATAATCTTCCGATGCTGGTTGTGGCCAAAGGTGGAACCAGAGGCGGTTGCGCTGCTACCGGCTGTTTGGTGGATTTGAACGGCGCGTGTCCATCGGAGCTACGAGTAGCGCGTGGTGGTAGTCGCGGTGGAAGTAGCGTGGCTTGTAGAAGCGCGTGTGAGGCTTTTAATGCTCCGCAATTTTGTTGCAGTGAGGCCTTCTCTACCCCTGACACGTGTCGTCCTTCTGTATATTCGGAGTTCTTCAAACATGCTTGCCCACGCTCTTATAGCTACGCGTATGATGACAAAACCAGCACTTTCACGTGCGCATCCGCCGACTACCTTATCATATTTTGTCCACTACCTTACACCAGATCTGTTTTGGAATTAGATCTCGGGTCGGTTCGTAATGCTAGTAGCCTTTCAGAAAGTGTTGAGTGCAAGGAAAGACGGAGTAGCGCTACCGCTCGTGAACAAGACCATGATGTACTTGAGAAGCCGAAGATCGATCAGCATTCGATCGGCAGGTTTAACTCAATACTAATGCCTATAAATCAACAAAACCTTCTGTTACTGACATCAGCCTTCCGTGTAAGTTTCAGGCTTATAGTCTCGAAATGA 1098 50.64 MRSAVYFSRNKEGKVLPIPSKPQSYRFSFNLPMDRSLLLATLFTLLLLLPDVQSTSFKLINKCRTTIWPGLLSGANTPQLPTTGFALRSGKSKIVPVPKSWSGRLWARTLCGLDSDGKFSCLTADCGSGKVECDGGGAKPPATLAEFTLNGADGLDFYDVSLVDGYNLPMLVVAKGGTRGGCAATGCLVDLNGACPSELRVARGGSRGGSSVACRSACEAFNAPQFCCSEAFSTPDTCRPSVYSEFFKHACPRSYSYAYDDKTSTFTCASADYLIIFCPLPYTRSVLELDLGSVRNASSLSESVECKERRSSATAREQDHDVLEKPKIDQHSIGRFNSILMPINQQNLLLLTSAFRVSFRLIVSK 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4963336 4965014 + Cp4.1LG16g03070.1 Cpe16g00306 482681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00306 365 SMART tha2 57 279 IPR001938 -
Cpe16g00306 365 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 43 290 - -
Cpe16g00306 365 PRINTS Pathogenesis-related protein signature 56 68 IPR001938 -
Cpe16g00306 365 PRINTS Pathogenesis-related protein signature 156 172 IPR001938 -
Cpe16g00306 365 PRINTS Pathogenesis-related protein signature 269 278 IPR001938 -
Cpe16g00306 365 PRINTS Pathogenesis-related protein signature 104 115 IPR001938 -
Cpe16g00306 365 ProSiteProfiles Thaumatin family profile. 54 279 IPR001938 -
Cpe16g00306 365 ProSitePatterns Thaumatin family signature. 117 133 IPR017949 -
Cpe16g00306 365 PANTHER OS03G0233200 PROTEIN 43 290 IPR001938 -
Cpe16g00306 365 SUPERFAMILY Osmotin, thaumatin-like protein 56 279 IPR037176 -
Cpe16g00306 365 Pfam Thaumatin family 61 279 IPR001938 -
Cpe16g00306 365 CDD TLP-PA 56 278 - -
Cpe16g00306 365 Gene3D Thaumatin 55 279 IPR037176 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g01026 Cpe-Chr14:8632746 Cpe16g00306 Cpe-Chr16:4963336 9.08E-103 dispersed
Cpe16g00306 Cpe-Chr16:4963336 Cpe08g00923 Cpe-Chr8:7261778 2.17E-91 dispersed
Cpe16g00306 Cpe-Chr16:4963336 Cpe16g00307 Cpe-Chr16:4967629 6.94E-94 tandem
Cpe10g00668 Cpe-Chr10:3853700 Cpe16g00306 Cpe-Chr16:4963336 5.33E-95 wgd
Cpe11g00260 Cpe-Chr11:1408672 Cpe16g00306 Cpe-Chr16:4963336 1.78E-114 wgd
Cpe16g00306 Cpe-Chr16:4963336 Cpe19g00864 Cpe-Chr19:6375834 1.17E-89 wgd
Cpe16g00306 Cpe-Chr16:4963336 Cpe02g00066 Cpe-Chr2:340568 7.47E-116 wgd
Cpe16g00306 Cpe-Chr16:4963336 Cpe06g00061 Cpe-Chr6:313847 5.05E-118 wgd
Cpe16g00306 Cpe-Chr16:4963336 Cpe07g00360 Cpe-Chr7:2326165 1.91E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00306 - - csv:101216503 452.595