Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00311 ATGGCCGCCATTGAAGAACCCACCAAGCCCACTTCCCTCTACGACTCCCCATCGGCGTCTCAACCCCTCCTCTCCAATCCCCCTGAATCCGACTCATCTCAGTATCTTCAGATCTCCTACAACCATGGCGACAGACCGTTCAAGGACATCCCCATCCTTGTTCTTTTCCTTCTCTTCGTTTTATCCTCATTTGGGTTTGGGATTTTCGCCACTTTTAATCGAAACCCCAATTACCCAAATCTCTCTTCTTATCACTATGATTTCAAAACCTCCAATTGTGTTACGGATTCCCCCAATTGGGTTCCTCTGTACTCCTCTTCTTCCTCTGTTTTGAAATCCTTGATTTGGGCCCTTGTAGCTACTTCGATTTTAAGCTTACCCATTTGCTTTCTTTTACTTCTCTTGCTTAAGCACTACACGAGACAGATTGTGTACGCCTTACTTCCTTTCTTCGTCGTTGTTCCTATCTTCATCAATGTCTATTGGTTCGTCGCCTGTACGATTAACCCCACTTGTAATAACGACTTCCCCATGGTGTATAGGATTTTAGTTCTCATCTTCATATTCTTGGTGATTGGTGTAATCGTGTGGATATTCATCGTTAATTGGCACCGAATTGAGCTCACGATTAAGATAATTGGGGTTGCCGCGGATGCACTGTCAATGAATCTGGGTCTGTTTGTGGTTATACCGAGTATGACTCTGGGGTTACTGGTTTATTATGCGCCAATTGTTCTGTTCTTGGTGTTTGCGAGGTTGAATGGGAAGATTGTGCCCGATCACCATGGATCGAGTGGAGAGTATGCTTGTGTTTGGAAGGAAGACAAGTGGGTACCTGCTTATTATGCATTGGCGATTCTTACGATGTTGTGGTCTGCTGCTGTAATGGTGGAAGGGCAAGTTTATGTGATTAGTGGTACCATATCGCAGTGGTATTTCTCGAATGAAGAGGATGACACTCCAAGACGGAGTATTAGGAAGTCTTTAAGGAATGCATTTGGCCCCTCTGCTGGCACTATATGTTTATCTGGCTTACTAATTCTTGTGGCCGTGAGCCATCTTGGTGTTAAAACATACCTTGTCGCCATTGCAGCATGGCTTCTCCTGATCGTGGTACTCGCATTCTTTATCCATGTACTGGATAATGTAATCGAAACCGTGTACGTATGCTATGCTATTGACAGGGACAGAGGTGCAGTATGCAAACAAGATGTCCATGAGGTTTATGTTCACCTACCCATTAGCAGGAATCACAGATCATCTCTGATGACTGTGTTTGAGTATGCTATTCTGTGTATAATGAGTTGTCACCCTGTACATTTTGAGCCTTTCCCCCCACCTTTATGGGGTATTTTGGTAAGGCGATCTTTATATAAAGCCCCAACTCGGTTCACTCTCACTCGCGGTAGTCAATTTTCAGAGTTCCGAGAGTGTTCACAGACCAGTTCCCGACGAGACCTAACAATGGCGATGGCTTTCAAGATGGCAACCACTGGAATGTGGGTGAGCGATGAGTGCAAGAACTCGTTTATGGAGATGAAATGGAAGAAGGTGCATAGGTATATTGTGTTTAAGATCGATGAAGGATCGAGGTTAGTCACCGTTGACAAGGTCGGTGGTTCGGCCGAAAGCTACGATGATCTAACTGCATCATTGCCGAATGACGACTGTCGATACGCAGTGTTCGATTTCGACTTCGTCACCGTTGATAATTGCCGGAAGAGCAAGATCTTCTTCATCGCGTGGTCGCCCACCGCATCAAGAATTAGAGCAAAAATTCTATACGCAACTTCGAAAGCCGGGCTGAGGAGAGTGCTGGAAGGCATTCATTACGAGCTTCAAGCAACCGATCCAACTGAAATGGGGATGGATGTGATCAAGGACAGAGCCAAATAG 1896 45.31 MAAIEEPTKPTSLYDSPSASQPLLSNPPESDSSQYLQISYNHGDRPFKDIPILVLFLLFVLSSFGFGIFATFNRNPNYPNLSSYHYDFKTSNCVTDSPNWVPLYSSSSSVLKSLIWALVATSILSLPICFLLLLLLKHYTRQIVYALLPFFVVVPIFINVYWFVACTINPTCNNDFPMVYRILVLIFIFLVIGVIVWIFIVNWHRIELTIKIIGVAADALSMNLGLFVVIPSMTLGLLVYYAPIVLFLVFARLNGKIVPDHHGSSGEYACVWKEDKWVPAYYALAILTMLWSAAVMVEGQVYVISGTISQWYFSNEEDDTPRRSIRKSLRNAFGPSAGTICLSGLLILVAVSHLGVKTYLVAIAAWLLLIVVLAFFIHVLDNVIETVYVCYAIDRDRGAVCKQDVHEVYVHLPISRNHRSSLMTVFEYAILCIMSCHPVHFEPFPPPLWGILVRRSLYKAPTRFTLTRGSQFSEFRECSQTSSRRDLTMAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGSAESYDDLTASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRRVLEGIHYELQATDPTEMGMDVIKDRAK 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4987625 4996495 + Cp4.1LG16g03020.1 Cpe16g00311 482686

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00311 631 CDD ADF_cofilin_like 498 630 IPR017904 GO:0015629|GO:0030042
Cpe16g00311 631 Pfam Cofilin/tropomyosin-type actin-binding protein 506 628 IPR002108 GO:0003779
Cpe16g00311 631 MobiDBLite consensus disorder prediction 1 32 - -
Cpe16g00311 631 PANTHER COFILIN-RELATED 479 631 IPR017904 GO:0015629|GO:0030042
Cpe16g00311 631 SUPERFAMILY Actin depolymerizing proteins 494 629 - -
Cpe16g00311 631 PANTHER ACTIN DEPOLYMERIZING FACTOR 5-RELATED 479 631 - -
Cpe16g00311 631 MobiDBLite consensus disorder prediction 11 32 - -
Cpe16g00311 631 ProSiteProfiles ADF-H domain profile. 499 631 IPR002108 GO:0003779
Cpe16g00311 631 Pfam Plasma-membrane choline transporter 186 348 IPR007603 GO:0022857|GO:0055085
Cpe16g00311 631 SMART adf_2 504 631 IPR002108 GO:0003779
Cpe16g00311 631 Gene3D Severin 496 631 IPR029006 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00311 - - - bhj:120088409 558.525
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01380 Cpe16g00311 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00062 Cpe-Chr5:308648 Cpe16g00311 Cpe-Chr16:4987625 6.27E-61 dispersed
Cpe16g00311 Cpe-Chr16:4987625 Cpe15g00079 Cpe-Chr15:569097 4.97E-60 dispersed
Cpe16g00311 Cpe-Chr16:4987625 Cpe05g01380 Cpe-Chr5:9714402 1.74E-137 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g143 . Blo15g00375 Bda06g00480 . Bpe07g00719 . . Bma12g00926 . . Cma02g00245 Cma20g00759 . Car20g00660 . . . . . . . . . . . . . . . . . . . . . Lsi10g00486 . Chy11g00265 . . . . . . . . . Sed05g3603 . Cmo20g00755 . . . . Cpe16g00311 Cpe05g01380 Bhi10g01862 Tan05g1154 Cmetu11g2104 . Hepe08g0284 . . Cla02g01158 Cam02g1234 Cec02g1243 Cco02g1283 Clacu02g1215 Cmu02g1184 Cre02g1495 . Csa02g01381 . Cme11g00389
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005973 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 2 1 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00311 Cpe_Chr16 FPKM 32.499393 31.837589 18.254927 20.31179 40.056992 26.41221 34.728485 11.628619 14.565748 17.294449