Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00314 ATGGATTTTCTGAACGCCCTATGGAGCATTTGGGGATTCTTTGTCGGAATTTCAGTGGGTCTGGTGGTCGGATATTTCTTGTTTATATACTTCAAACCAAGCGATGTGAAGGAACCTGAGATTAAGCCGTTGACTGAACCTGACTCTGAAACCATACAGCGGATGCTCCCTGAGATGCCGTTGTGGGTGAAAAATCCTGATTATGATCGTATGGACTGGCTAAACACGTTTATTGACTATCTCTGGCCTTATCTTGACAAGGCAATTGTGAAGACAGTAAGAGCTGTTGTTAAGCCTATAATTGCCGAGGAGATTCCCAAGTATAAGATCAAGTCGCTGGTGGATCTGCAAGTTTTCGCGGTGCCACGGATCGTCTTGAAGCCACTGGTTCCGAGCTTTCCTTGTTTTGCAAACATTTCCGTGTCTCTAATGGAGAAGCCACACGTCGATTTTGGACTAAAGTTCATGGGGATCGACCTGATGTCAATACCCGGTCTTTATACGTTTGTCCAGGAGCGCATAAAAGATCAGATTGCAAGCATGTATCTATGGCCAAAGACTCTAAAAATACAAATTATGGACTCAGCTAAAGCGTTTAAGAAGCCCGTGGGGATTCTCCATGTGAAAGTTGTGAGAGCAATGAACCTTAGGAAAAAGGATCTTTTAGGTGCATCCGATCCATATTTGAAACTAAAGCTCACCGACGACAAGTTACCTTCGAAGAAAACATCCGTGAAGCACAATAACTTGAACCCCGAATGGAACGAGGAGTTCAAGTTAGTCGTTAAAGATCCCGAATCCCAAGCCTTAGAGCTTCGTGTTTATGATTGGGAGCAGGTTGGGAAGCACGACAAGATGGGCATAAACGTTATACCGCTGAAAGATCTTCCTCCCGACGAGGTGAAAGTTCTGACTCTCGACCTTAGAAAGAAGGTTGATTCGGGTGGCACTGATAACGAGAAGGACCGCGGTCAGCTCGTAGTTGAACTTAAATATAAACCGTTAAAAGAAGAAGAGATGTCGAGGGGTTTTGACGAAATGCATGAAGTACCGAAAGCTCCCGAAGGAACGCCTGCTGGGGGCGGTTTGCTGGTTGTCATAGTTCATGAAGCTGAGGATGTTGAAGGAAAACATCATACCAACCCATTTGTAAGGATTTACTTCAGAGGGGATAAGAGAAAGACTAAGCGGGTGAAGAAGAACAGAGATCCGAGATGGGAGGAGGAGTTCCATTTTGCGCTAGACGAACCGCCCACGAACGACAAAGTACACGTAGAAGTAGTCAGTACTTCTTCAAAAATAGGTTTGCTGCATCCAAAGGAATGTCTTGGCTATGTGGACATCAGCCTGTCGGATGTGGTGGCCAACAAAAGGATTAACGAGAAGTACCATCTTATAGACTCAAAGAATGGACGCATCCATGTCGAACTGCAATGGAGAACTTCCTCGTAG 1452 45.11 MDFLNALWSIWGFFVGISVGLVVGYFLFIYFKPSDVKEPEIKPLTEPDSETIQRMLPEMPLWVKNPDYDRMDWLNTFIDYLWPYLDKAIVKTVRAVVKPIIAEEIPKYKIKSLVDLQVFAVPRIVLKPLVPSFPCFANISVSLMEKPHVDFGLKFMGIDLMSIPGLYTFVQERIKDQIASMYLWPKTLKIQIMDSAKAFKKPVGILHVKVVRAMNLRKKDLLGASDPYLKLKLTDDKLPSKKTSVKHNNLNPEWNEEFKLVVKDPESQALELRVYDWEQVGKHDKMGINVIPLKDLPPDEVKVLTLDLRKKVDSGGTDNEKDRGQLVVELKYKPLKEEEMSRGFDEMHEVPKAPEGTPAGGGLLVVIVHEAEDVEGKHHTNPFVRIYFRGDKRKTKRVKKNRDPRWEEEFHFALDEPPTNDKVHVEVVSTSSKIGLLHPKECLGYVDISLSDVVANKRINEKYHLIDSKNGRIHVELQWRTSS 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5012494 5016253 - Cp4.1LG16g03100.1 Cpe16g00314 482689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00314 483 CDD C2 206 308 - -
Cpe16g00314 483 SMART C2_3c 363 462 IPR000008 -
Cpe16g00314 483 SMART C2_3c 205 305 IPR000008 -
Cpe16g00314 483 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 113 481 - -
Cpe16g00314 483 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 112 - -
Cpe16g00314 483 Pfam C2 domain 363 465 IPR000008 -
Cpe16g00314 483 Pfam C2 domain 204 302 IPR000008 -
Cpe16g00314 483 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 113 481 IPR045050 GO:0008289
Cpe16g00314 483 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 112 IPR045050 GO:0008289
Cpe16g00314 483 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 362 481 IPR035892 -
Cpe16g00314 483 Gene3D C2 domain 363 482 IPR035892 -
Cpe16g00314 483 PRINTS C2 domain signature 221 233 IPR000008 -
Cpe16g00314 483 PRINTS C2 domain signature 248 261 IPR000008 -
Cpe16g00314 483 PRINTS C2 domain signature 270 278 IPR000008 -
Cpe16g00314 483 ProSiteProfiles C2 domain profile. 346 463 IPR000008 -
Cpe16g00314 483 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 337 IPR035892 -
Cpe16g00314 483 Gene3D C2 domain 198 353 IPR035892 -
Cpe16g00314 483 ProSiteProfiles C2 domain profile. 184 306 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00314 - - - csv:101218559 850.892
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe15g00588 Cpe16g00314 CCT
Cpe15g00588 Cpe16g00314 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00314 Cpe-Chr16:5012494 Cpe06g00325 Cpe-Chr6:1797810 5.24E-56 dispersed
Cpe11g00263 Cpe-Chr11:1422756 Cpe16g00314 Cpe-Chr16:5012494 0 wgd
Cpe15g00588 Cpe-Chr15:6668193 Cpe16g00314 Cpe-Chr16:5012494 0 wgd
Cpe16g00314 Cpe-Chr16:5012494 Cpe07g00356 Cpe-Chr7:2298987 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g153 . . . . . . . . Cmo19g00743 . . Cma20g00755 . Car20g00656 Sed05g2221 . Cpe15g00588 Bhi05g01723 Tan02g0693 Cmetu01g1869 . Hepe02g0429 . . Cla02g00433 Cam02g0442 Cec02g0440 Cco02g0458 Clacu02g0443 Cmu02g0438 Cre02g0772 Cone12ag1230 Cone8ag1282 . . Lsi10g00492 Csa07g00094 Chy11g00259 Cme01g01268 Blo04g00565 . . Bda14g00614 Bpe15g00816 . Bma03g00606 . Sed01g0198 . Cmo20g00751 . Cma19g00735 . Car19g00564 Cpe16g00314 . Bhi10g01856 Tan05g1144 Cmetu11g0298 . Hepe08g0289 . . Cla02g01164 Cam02g1241 Cec02g1250 Cco02g1291 Clacu02g1223 Cmu02g1191 Cre02g1502 . Csa02g01388 . Cme11g00384
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000733 3 5 3 2 4 3 4 3 3 2 3 3 4 3 3 4 3 4 4 3 3 3 3 3 3 2 3 4 4 2 96
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00314 Cpe_Chr16 FPKM 0.677871 0.0 1.008998 1.088301 1.321101 1.024339 2.341881 1.460634 2.536796 2.537732