Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00315 ATGGAAACTCGGAGCAGAAAGCGGGCGGAGGCCTCCTCAGCTGCCCCTTCTTCTTCGTCTTCTGGTCCCACTACCCGTTCTAGCAAGCGCGCTCGTCTCTCTGGTACTTTCTCTTCGAATCTTGCTGCATCCACTCTTTCGATCTCAACACGTTCTCGCTCTACTCGAAACCAAGAACCGTCTGCCACTAGTACTCCAATGGACTCGACCAATGAGTCATCAGGGTCACGCCGACGCGGGAAGAATTCTGATAAGGAAAACTCGGATAAGGGGAAGGAAAAAGAACACGAGGTTAGAATCGGGGATAGAGAAAGAAATGCTGAGCAGAGCTTTGGGTTAAATATTGAAGGCAGTGGCGGTGGGGATGATGATGATAACGACAGTGAAGGAGGAATGGGAGTCTTACAGCAAAATTTATCCACAGCAAGCAGCGCCCTTCAAGGACTTCTGAGGAAACTCGGTGCTGGACTGGATGATTTACTTCCATCTTCTGCAATTGCATCGGCTTCATCCTCACAGCAGAGAGGACGGCTTAAGAAGATCTTATCTGGGTTGAGAGCGGATGGAGAAGAAGGAAGGCAGGTTGAGGCATTGACCCAACTTTGTGAGATGCTCTCTATTGGCACCGAGGAGTCTCTAAGTACTTTCTCTGTGGATTCCTTTGTCCCTGTCCTCGTTGGGCTACTTAATCACGAAAGCAATCCTGATATAATGCTTTTAGCGGCCAGGGCACTGACCCATCTGTGCGATTTCCTACCTTCATCATGTGCTGCCGTCGTGCATTATGGTGCTGTTTCCTGCTTCTGTGCTAGATTGCTGACTATAGAATACATGGACCTAGCTGAACAGTCCCTGCAAGCTTTAAAGAAGATATCCCAGGAACACCCTACTGCCTGTCTGCGGGCTGGTGCTCTTATGGCTGTGCTTTCATATTTAGATTTCTTCTCCACAGGAGTTCAGAGAGTTGCATTGTCAACTGCTGCTAATATGTGCAAGAAGCTTCCTTCAGATGCAGCCGACTTCGTGATGGAAGCTGTTCCCCTGCTGACGAACCTTCTTCAGTATCATGATGCAAAAGTGTTGGAGCATGCTTCAGTTTGTTTGACTCGTATTGCCGAGGCCTTTGCATCATCTCCTGATAAATTAGATGAACTGTGTAACCATGGACTTGTTACTCAAGCTGCCTCACTCATTTCCACCAGTAGTACCGGAGGTGGGCAGTCAACACTTAGCTCAGCTACTTACACAGGATTAATCCGACTTCTTTCCACATGTGCAAGTGGATCTGCCTTAGGTGGGAAAACTTTGCTGCTTCTTGGGATCAGTGGGATTCTTAAAGATATATTATCTGGTTCTGGCGTGTCTACTAATTCATCTGTTTCGCCTGCATTAAATAGACCACAAGAGCAGGATTCAAATTTCTACCCCTTCTACAATTCCAAGCTTCAGACACTGAGAGTTGCTTTCTTTGGTAATGGCGTGGTTTCTTGGATTTTTGAGATTGTCAACTTGGCAAATGAGCTTCTACCCCCTCTACCTCAAGGAACTATTTCCTTTCCGCCCAACTATAATTTGTTTGTGAAAGGACCTGTCATAAAAAAGCCATCTACCAGCGGTTCTGTGAAAGAAGAAGATCCTACTGATAGTGCCCCGGAGGTGTCAGCTCGTGAGAAACTCTTAAAGGATCAGCCTGAGCTCCTCCACCAGTTTGGAATGGATCTCCTTCCTATCTTAATACAGATCTATGGTTCCAGTGTGAATGGTCCGGTACGTCATAAATGTCTCTCAGGAATTGGAAAATTGATGTACTTCAGCACTCCAGAGATGATACAGTCATTATTGAATGTGACTAATATAGCAAGTTTTCTAGCTGGTGTTTTGGCATGGAAAGATCCACACATTTTGATTCCTTCTCTCCAAATTGCTGAGATTCTTATGGAAAAGCTTCCTGAAACTTTTTCTAAGATGTTCCTTCGAGAGGGTGTTGTTTATGCTGTTGACCAGCTTATCTTAGCTAATAACCAAAATACTGCTACCCAAGTGGCTTCTGTTGAGAAGGACAACAACTCTGCATCTGGAGCTTCTTCTCGCACTCGACGTTACAGGCGGCGCAGTGGAAATATGACTTCAGAAGGAAGTTCACTGGATGAAAACAAAAATCCTGTTTCTGGAGGCACTGTTCCACAAGGTTCAGTGGAGGTTCCATCAATTAACTCTAATCTCCGAACTTCTGTAAGTGCCTGTGCCAATGCTTTTAAAACAAAGTATTTCCCTTTAGATCCGGGAGATGTTGAAGTTGGAGTTACAGATGATCTCTTACGTTTGAAGAATCTTTGCGCCAAGTTGAATGCTGGTATTGATGTTCAGAAAAGTAAATCGAAAGGAAAGTCGAAAGCTTCAGGGTCCCGCATAGATGATATTATTACAAATAAGGAGCAGTATTTAACTGGCGTGATATCTGAAATGCTAGTTGAATTAGGCAAAGATGATGGTGTTTCCACTTTTGAATTTATTGGTAGTGGCGTTGTTGGAGTTCTGCTTGACTACTTTTCTTGTGGATACTTTTCTAAAGGAAGAATTTTGGAAGCGGAGTTGCCAAAGATTCGGCAGCAAGTGCTTAAAAGATTTAAATCATTTGTTTCTGTTGCTCTTTCCACAAGCATTAATGAGGGGACAGTAGCTCCTATGACAGTCTTAGTTCAAAAGCTACAGAGTGCTTTATCCTCATTGGAGCGTTTTCCAGTTGTCCTGAGCCATTCTTCTAGATCATCCAGTGGTAGTGCACGTCTTTCCTCTGGGCTAAGTGTATTATCTCAGCCATTTAAGTTACGACTTTGTCGAGCCCATGGAGAAAAATTACTTCGTGATTATTCATCAAATATTGTTCTGATTGATCCATTGGCAAGTTTAGCAGCTGTTGAAGAATTTCTGTGGCCTAGAGTTCAGAGAAGCGAGGGTCAGAAACTTTCAGTATCTGGTGCAAACTCAGATTCAGGAACTACGCCTCCAGGAACTGTTGCTCCATCAGGGCTAAAATCAACCCCCAATTCAACCACTTGCCGTTACTCTACTAGGTCTAGATCATCGATGACTATTGGAGAAAGGGCAGGGAAGGAATTGTCACAGGATAAAAGCACATCGAAGGGGAAGGGGAAAGCTATTCTAAAGCCTGCCTGGGAGGAGAAGAGAGGCCTACAAACTAGAAGTTCTACTCGTAGAAGAGCAGCTGTGGACAAGGATGCCCAAATGAAGCCTGTAAATGGAGAGACCACTTCTGAGGATGAAGAATTGGACCTATCCTCCATCCAGATTGATGATTCTTTAGTGATAGAGGATGATGATATTTCTGATGATGAAGATGATGACCACGATGATGTGCTGCAGGATGACTCTCTTCCTCTTTGTATGCCTGAAAAGGTGCATGATGTCAAATTGGGTGACACAGCTGAAGATGGCGATGCTGGTCCGGCTACAAGTGATAGCCAGGTTCATTCAACTTTTGGCTCTAGCAGTAGAACTGCGACAGTCAGGGGTTCTAATTCTCCTGATCATAGGGGTGGAAATTCTTTTAGTGCAAGGGGAAGTATGACATTTGCTGCTGCTGCTATGGCTGGACTTGGACCAGCTAACGGCAGAGGTTTCCGTGGAGGTCGGGATCCACAGGGACATCCTCTCTTTGGTGGTTCCAATGACAACCCAAAATTACTCTTTTCTTCTGGTGAGAAGCAGCTTGATAGGCATTTGACAATATACCAAGCTGTTCAACGGCAGCTTGTTTTGAATGAGGATGATGATGAGAGGTTTGCTGGGGCTGGCAATGATTTCTTATCTAATGATGGGAGCAGTTTGTGGGGTGATATATATACCATCACGTATCAGAGGGCAGATAATCAATCTGAAAGAGCTGCTTTAGCTGGGGAATCAAGCTCCTCTAAATCTAAATCTACCAAATGTGTATCAACTTCCAATTCAAATTCAGAGTCTCAGTTCCATCAAATGTCACTTTTAGATAGTATTTTACAAGGAAAACTTCCATGTGATTTGGACAAATCTAATCCTACATATGATATACTATCTTTATTGCGTGTACTTGAGGGATTGAATCAGCTTGCTCCTCGCTTGAGGGCTCAAATAGTGTCAGATCAATTTGCAGAGGGAAAGATCACTATGCTTGATGAATTGGGTGGAATTGGAGGAAAGGTTCCTCATGAGGAATTTGTCAACAGTAAGCTTACTCCCAAATTGACTCGACAAATTCAAGACGCTCTTGCACTATGCAGTGGGAGCCTTCCTTCATGGTGTTATCAATTGACTAAGGCATGCCCGTTCTTGTTTCCTTTTGAGACACGGCGACAATATTTTTATTCAACTGCATTTGGGTTGTCACGTGCGTTATATCGGCTACATCAGCAGTTAGGAGCTGATGGTCTTGGAACAGTAAATGAACGAGAGGGAAGGGTTGGAAGATTGCAGCGCCAAAAGGTTCGTGTCTCCCGTAATCGTATACTGGATTCTGCTGTGAAAGTTATGGAGATGTATTCTAACCAGAAGGCTGTTCTTGAAGTAGAATATTTTGGTGAAGTGGGAACTGGATTAGGTCCTACCCTTGAATTCTACACACTTTTAAGTCATGAATTGCAGAGGGCTGGACTTGGAATGTGGAGGTCTAATTCATTGCAAGAGTCAATAGATAGTGGTGAAGATGGACAGCTCAGGAAGCCTAAAGATGGCTCTAAGCTTATTTCTGATGCAGGCAATATTGATATCATCCAATCTCCTCTTGGGTTGTTTCCACGACCTTGGCCACCAAATGCTGATTCTTCTGATGGCAGCCAATTTTCGAAGGTTATTGAATATTTCCGGCTTGTTGGTCGTGTGATGGCTAAAGCTTTGCAAGATGGAAGACTATTGGATCTACCGCTCTCAACAGCATTTTACAAGCTTGTTCTTGGTCAAGATCTTGATTTGTACGATATCCTCTCATTTGACCCTGAGCTTGGGAAGACTCTACAAGAACTGCAGGCTCTTGTCTGCCGGAAACAGTATTTAGGATTGGTAGATGGTGACAATCAAAATACACTTTCCAACTTATCTTTCCGTGGGATTCCAGTTGAAGATCTCTGCTTGGATTTTACAGTTCCTGGCTATCCGGACTACGTTTTGAGACCAGGAGATGAAACTGTTAATATTCATAACTTGGAGGAGTACATATCCTTAGTATTAGATGCAACTGTCAAGACTGGAATAATGCGGCAAATGGAAGCATTTACTACAGGATTCAATCAGGTTTTTGACATCACAGCATTACGCATTTTCATTCCCCATGAGTTGGACCATTTGCTATGTGGCCGTAGAGAATTGTGGAAGGCTGACACACTTGTTGATCATATTAAATTTGATCATGGATACACAGCCAAAAGTCCTGCCATAGTCAATTTTCTTGAGATTATGGGCGAATTCACACCGGAGCAGCAGAGAGGATTCTGCCAATTTGTTACAGGTGCACCTAGGCTTCCACCAGGTGGCCTTGCAGTGCTGAATCCAAGATTGACCATCGTGAGAAAGCACTCATCAACTGCAACAAACGCAGCAAACAGCGCGACAGGTGCATCTGAATCAGCAGACGATGATTTGCCTAGTGTCATGACATGCGCCAATTACCTTAAGCTTCCTCCATACTCGACCAAGGAAATAATGTACAAGAAACTAATGTATGCGATCAATGAGGGGCAGGGATCATTTGATTTGTCATGA 5754 43.93 METRSRKRAEASSAAPSSSSSGPTTRSSKRARLSGTFSSNLAASTLSISTRSRSTRNQEPSATSTPMDSTNESSGSRRRGKNSDKENSDKGKEKEHEVRIGDRERNAEQSFGLNIEGSGGGDDDDNDSEGGMGVLQQNLSTASSALQGLLRKLGAGLDDLLPSSAIASASSSQQRGRLKKILSGLRADGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDFLPSSCAAVVHYGAVSCFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISTSSTGGGQSTLSSATYTGLIRLLSTCASGSALGGKTLLLLGISGILKDILSGSGVSTNSSVSPALNRPQEQDSNFYPFYNSKLQTLRVAFFGNGVVSWIFEIVNLANELLPPLPQGTISFPPNYNLFVKGPVIKKPSTSGSVKEEDPTDSAPEVSAREKLLKDQPELLHQFGMDLLPILIQIYGSSVNGPVRHKCLSGIGKLMYFSTPEMIQSLLNVTNIASFLAGVLAWKDPHILIPSLQIAEILMEKLPETFSKMFLREGVVYAVDQLILANNQNTATQVASVEKDNNSASGASSRTRRYRRRSGNMTSEGSSLDENKNPVSGGTVPQGSVEVPSINSNLRTSVSACANAFKTKYFPLDPGDVEVGVTDDLLRLKNLCAKLNAGIDVQKSKSKGKSKASGSRIDDIITNKEQYLTGVISEMLVELGKDDGVSTFEFIGSGVVGVLLDYFSCGYFSKGRILEAELPKIRQQVLKRFKSFVSVALSTSINEGTVAPMTVLVQKLQSALSSLERFPVVLSHSSRSSSGSARLSSGLSVLSQPFKLRLCRAHGEKLLRDYSSNIVLIDPLASLAAVEEFLWPRVQRSEGQKLSVSGANSDSGTTPPGTVAPSGLKSTPNSTTCRYSTRSRSSMTIGERAGKELSQDKSTSKGKGKAILKPAWEEKRGLQTRSSTRRRAAVDKDAQMKPVNGETTSEDEELDLSSIQIDDSLVIEDDDISDDEDDDHDDVLQDDSLPLCMPEKVHDVKLGDTAEDGDAGPATSDSQVHSTFGSSSRTATVRGSNSPDHRGGNSFSARGSMTFAAAAMAGLGPANGRGFRGGRDPQGHPLFGGSNDNPKLLFSSGEKQLDRHLTIYQAVQRQLVLNEDDDERFAGAGNDFLSNDGSSLWGDIYTITYQRADNQSERAALAGESSSSKSKSTKCVSTSNSNSESQFHQMSLLDSILQGKLPCDLDKSNPTYDILSLLRVLEGLNQLAPRLRAQIVSDQFAEGKITMLDELGGIGGKVPHEEFVNSKLTPKLTRQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLHQQLGADGLGTVNEREGRVGRLQRQKVRVSRNRILDSAVKVMEMYSNQKAVLEVEYFGEVGTGLGPTLEFYTLLSHELQRAGLGMWRSNSLQESIDSGEDGQLRKPKDGSKLISDAGNIDIIQSPLGLFPRPWPPNADSSDGSQFSKVIEYFRLVGRVMAKALQDGRLLDLPLSTAFYKLVLGQDLDLYDILSFDPELGKTLQELQALVCRKQYLGLVDGDNQNTLSNLSFRGIPVEDLCLDFTVPGYPDYVLRPGDETVNIHNLEEYISLVLDATVKTGIMRQMEAFTTGFNQVFDITALRIFIPHELDHLLCGRRELWKADTLVDHIKFDHGYTAKSPAIVNFLEIMGEFTPEQQRGFCQFVTGAPRLPPGGLAVLNPRLTIVRKHSSTATNAANSATGASESADDDLPSVMTCANYLKLPPYSTKEIMYKKLMYAINEGQGSFDLS 1917
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5018252 5031218 + Cp4.1LG16g03190.1 Cpe16g00315 482690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00315 1917 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 50 471 - -
Cpe16g00315 1917 MobiDBLite consensus disorder prediction 535 554 - -
Cpe16g00315 1917 MobiDBLite consensus disorder prediction 987 1031 - -
Cpe16g00315 1917 MobiDBLite consensus disorder prediction 681 696 - -
Cpe16g00315 1917 MobiDBLite consensus disorder prediction 707 733 - -
Cpe16g00315 1917 SMART hect_3 1507 1917 IPR000569 GO:0004842
Cpe16g00315 1917 MobiDBLite consensus disorder prediction 1301 1325 - -
Cpe16g00315 1917 MobiDBLite consensus disorder prediction 1158 1192 - -
Cpe16g00315 1917 MobiDBLite consensus disorder prediction 10 73 - -
Cpe16g00315 1917 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 50 471 IPR045322 GO:0006511|GO:0061630
Cpe16g00315 1917 Gene3D Hect, E3 ligase catalytic domain 1788 1915 - -
Cpe16g00315 1917 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 498 1917 IPR045322 GO:0006511|GO:0061630
Cpe16g00315 1917 MobiDBLite consensus disorder prediction 681 733 - -
Cpe16g00315 1917 Gene3D - 166 464 IPR011989 -
Cpe16g00315 1917 CDD HECTc 1493 1912 IPR000569 GO:0004842
Cpe16g00315 1917 ProSiteProfiles HECT domain profile. 1517 1917 IPR000569 GO:0004842
Cpe16g00315 1917 MobiDBLite consensus disorder prediction 74 106 - -
Cpe16g00315 1917 MobiDBLite consensus disorder prediction 1037 1080 - -
Cpe16g00315 1917 MobiDBLite consensus disorder prediction 1092 1127 - -
Cpe16g00315 1917 MobiDBLite consensus disorder prediction 1135 1149 - -
Cpe16g00315 1917 MobiDBLite consensus disorder prediction 538 554 - -
Cpe16g00315 1917 SUPERFAMILY Hect, E3 ligase catalytic domain 1485 1910 IPR035983 GO:0004842
Cpe16g00315 1917 Pfam HECT-domain (ubiquitin-transferase) 1541 1917 IPR000569 GO:0004842
Cpe16g00315 1917 MobiDBLite consensus disorder prediction 1 134 - -
Cpe16g00315 1917 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 498 1917 - -
Cpe16g00315 1917 MobiDBLite consensus disorder prediction 1210 1234 - -
Cpe16g00315 1917 MobiDBLite consensus disorder prediction 987 1192 - -
Cpe16g00315 1917 Gene3D Hect, E3 ligase catalytic domains 1433 1679 - -
Cpe16g00315 1917 SUPERFAMILY ARM repeat 177 673 IPR016024 -
Cpe16g00315 1917 SMART arm_5 209 250 IPR000225 GO:0005515
Cpe16g00315 1917 SMART arm_5 335 373 IPR000225 GO:0005515
Cpe16g00315 1917 SMART arm_5 292 332 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00315 K10590 TRIP12; E3 ubiquitin-protein ligase TRIP12 [EC:2.3.2.26] - csv:101218793 3278.8
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01375 Cpe16g00315 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00157 Cpe-Chr3:794430 Cpe16g00315 Cpe-Chr16:5018252 2.66E-109 dispersed
Cpe08g01123 Cpe-Chr8:8430191 Cpe16g00315 Cpe-Chr16:5018252 6.35E-111 dispersed
Cpe16g00315 Cpe-Chr16:5018252 Cpe11g00469 Cpe-Chr11:2652124 6.35E-34 dispersed
Cpe16g00315 Cpe-Chr16:5018252 Cpe05g01375 Cpe-Chr5:9662322 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g154 . . . . . Bpe12g00120 . . . . Cma02g00257 Cma20g00754 . Car20g00655 . . . . . . . . . . . . . . . . . . . . Cone10ag1234 . . Chy11g00258 . Blo04g00566 Blo13g00505 Bda15g01035 . Bpe15g00815 . Bma03g00607 Bma08g00752 Sed01g0197 Cmo02g00253 Cmo20g00750 . . . . Cpe16g00315 Cpe05g01375 Bhi10g01854 Tan05g1142 Cmetu11g0032 . Hepe08g0290 . . Cla02g01165 Cam02g1242 Cec02g1251 Cco02g1292 Clacu02g1224 Cmu02g1192 Cre02g1504 . Csa02g01389 . Cme11g00383
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003449 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 2 2 2 1 1 3 4 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00315 Cpe_Chr16 FPKM 3.671775 4.579836 8.613456 8.581772 17.25498 11.867416 16.430973 12.704126 12.032656 9.86712