Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00323 ATGGCTTTCTTCACCGGCGGCGGCCGATTCCGCGAGCTTCTTAAGAAGTACGGGAAGGTCGCAATCGGAGTTCATTTCTCAGTGTCGGCGGCTTCGATCACTGGCCTCTATGTCGCCATCAAGAACAATGTGGATGTTGAATCGCTACTCGATAAGTTACACATGGATGGATTCTCTTCCAAAGATCAGTCGCAGACTAGTCCCGATGATGGACTAGTGATCGAAGAAAGTCCTGCGTCGGATATTCAATCGACGGTGGCGCAGGAGCCGAGGACGAGGAATCGTACTGCAGAGCTTGCGGCGTCGACTGGCAGCGCGTTGGCTTTGGCCGTTCTTTGCAACAAGGCATTGCTGCCTATTCGGATTCCGATAACGATTGGGCTGACGCCGCCGATTGCGAGGATGCTGGCGAGGCGAGGGATTATGAGAAGTGGTTAA 438 53.65 MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSSKDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGSALALAVLCNKALLPIRIPITIGLTPPIARMLARRGIMRSG 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5072915 5073352 + Cp4.1LG16g03150.1 Cpe16g00323 482698

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00323 145 MobiDBLite consensus disorder prediction 59 93 - -
Cpe16g00323 145 MobiDBLite consensus disorder prediction 78 93 - -
Cpe16g00323 145 Pfam FAM210A/B-like domain 9 130 IPR009688 -
Cpe16g00323 145 PANTHER UNCHARACTERIZED 8 143 IPR045866 -
Cpe16g00323 145 PANTHER PROTEIN FAM210B, MITOCHONDRIAL 8 143 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00323 - - - mcha:111015379 238.424
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01366 Cpe16g00323 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00323 Cpe-Chr16:5072915 Cpe05g01366 Cpe-Chr5:9613853 5.21E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g176 . . . Bda08g00986 . . Bma05g00376 . . . Cma02g00266 Cma20g00743 . Car20g00646 . . . . . . . . . . . . . . . . . . . . . Lsi10g00503 . Chy11g00246 . . . . . . Bpe05g00294 . . Sed01g0183 Cmo02g00262 Cmo20g00741 . . . . Cpe16g00323 Cpe05g01366 Bhi10g01831 Tan05g1116 Cmetu11g0944 . Hepe08g0304 . . Cla02g01177 Cam02g1256 Cec02g1265 Cco02g1304 Clacu02g1238 Cmu02g1205 Cre02g1520 . Csa02g01402 . Cme11g00371
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007933 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00323 Cpe_Chr16 FPKM 91.198273 103.943909 4.935177 6.637464 7.273571 8.353726 6.985755 225.560547 251.09848 236.139099