Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00325 TATTATTTGAGGTTTGTTCGACTCTTTGTTTGTGGGTGTGTTGAGCACAGTGGCGTGGAGCCCATTGCTGGACCTCTGCTTTGCTGGCTTCAAGCTCTCCATTGTTGGTCTTTTATGGGGCTTGTCTGCCTTTCACCGAGGGAGAGAGAAAGGGAGGATGCTGATATTTTGGAGGGTTGTTTGGATGAGATGAGGGATGTTCTCAGGGTTGATGAACTTTCTGAGAGCTTGTTTTCGACCGCGGTCAGATCGACATGTGCACAAAGGTTCAGAGGCTGGTGGTCGACAGGATGGTCTCTTATGGATAGTGGACAGCATGCCAATGGTGAGTTTTCAATGGCTGTAGTTCAGGCTAATAATTTACTTGAGGATCAAAGCCAGATGGAGTCAGGGAATTTGAGCTTGCACGAGGCTGGGCCATATGGTACCTTTGTTGGTGTGTATGATGGGCATGGAGGGCCAGAGACATCTCGCTATGTAAATGATCATCTTTTCCAGCATCTTAAAAGGTTTGCTTCCGAGCAACAGTCCATGTCGGTGGATGTCATACGAAAGGCGTTTCAAGCTACCGAAGACGGGGTTATCGCTCAAGTTTCAAAACAATGGTCAATGAGGCCACTAATTGCAGCTGTTGGATCTTGCTGCCTTGTAGGTGTAATTTGTGGTGGAACTCTTTACATAGCTAACCTTGGTGATTCACGAGCTGTTTTAGGGAGAGTTGTAAAGGCAACAGGGGAAGTTTTGTCTGTCCAGTTGTCTGCTGAGCATAATGCATCTATAGAGTCTGTCAGGCAGGAGCTCCGGGCCCTGCACCCTGATGATCCACATATTGTAGTCTTGAAGCATAATGTATGGCGTGTGAAGGGCCTTATACAGGTTTCTCGATCCATCGGTGATGTCTATTTAAAGAGAGCTGAGTTCAACCGAGAGCCTCTATATGCTAAGTTTCGCCTTCGTGAACCTATCAAAACGCCCATACTGAACGCCGAACCATCTATTTCAGTGCTACAATTGCAACCACAGGATCAATTTATTATATTTGCTTCAGATGGGCTCTGGGAACACCTTAGTAATCAGGAAGCTGTTGATATTGTCCAAAACCATCCACGTAATGGAAGTGCAAGGAGGTTAGTGAAAGCAGCACTGCAAGAGGCAGCAAAGAAGAGAGAAATGAGGTACTCCGATTTGAAGAAGATTGACCGTGGCGTACGACGACATTTCCACGATGACATCACAGTGATTGTTGTGTTTCTCGACTCGAACCTTGTGAGCCGGGCTAGCTCTACAAAATGTGCAAGCCTATCCATGCGAGGGGGCGGAGTTAACTTGCATCCGAACTCATTGGCCCCTGGCATGGCCTGA 1362 47.14 YYLRFVRLFVCGCVEHSGVEPIAGPLLCWLQALHCWSFMGLVCLSPREREREDADILEGCLDEMRDVLRVDELSESLFSTAVRSTCAQRFRGWWSTGWSLMDSGQHANGEFSMAVVQANNLLEDQSQMESGNLSLHEAGPYGTFVGVYDGHGGPETSRYVNDHLFQHLKRFASEQQSMSVDVIRKAFQATEDGVIAQVSKQWSMRPLIAAVGSCCLVGVICGGTLYIANLGDSRAVLGRVVKATGEVLSVQLSAEHNASIESVRQELRALHPDDPHIVVLKHNVWRVKGLIQVSRSIGDVYLKRAEFNREPLYAKFRLREPIKTPILNAEPSISVLQLQPQDQFIIFASDGLWEHLSNQEAVDIVQNHPRNGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSNLVSRASSTKCASLSMRGGGVNLHPNSLAPGMA 453
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
16 5096653 5100850 + Cp4.1LG16g03220.1 Cpe16g00325 482700
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00325 453 Gene3D - 97 430 IPR036457 -
Cpe16g00325 453 SUPERFAMILY PP2C-like 121 419 IPR036457 -
Cpe16g00325 453 CDD PP2Cc 111 418 IPR001932 -
Cpe16g00325 453 PANTHER ALPHABET, ISOFORM E-RELATED 101 447 - -
Cpe16g00325 453 Pfam Protein phosphatase 2C 142 387 IPR001932 -
Cpe16g00325 453 ProSiteProfiles PPM-type phosphatase domain profile. 110 418 IPR001932 -
Cpe16g00325 453 SMART PP2C_4 102 416 IPR001932 -
Cpe16g00325 453 ProSitePatterns PPM-type phosphatase domain signature. 144 152 IPR000222 GO:0043169
Cpe16g00325 453 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 101 447 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cpe04g00604 Cpe16g00325 CCT
Cpe15g00605 Cpe16g00325 CCT
Cpe05g01363 Cpe16g00325 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g01040 Cpe-Chr14:8734462 Cpe16g00325 Cpe-Chr16:5096653 0 dispersed
Cpe16g00325 Cpe-Chr16:5096653 Cpe17g00072 Cpe-Chr17:417449 2.45E-143 dispersed
Cpe10g00688 Cpe-Chr10:3957063 Cpe16g00325 Cpe-Chr16:5096653 7.62E-114 wgd
Cpe15g00605 Cpe-Chr15:6773776 Cpe16g00325 Cpe-Chr16:5096653 1.72E-113 wgd
Cpe16g00325 Cpe-Chr16:5096653 Cpe19g00880 Cpe-Chr19:6451702 0 wgd
Cpe16g00325 Cpe-Chr16:5096653 Cpe04g00604 Cpe-Chr4:6319570 1.82E-110 wgd
Cpe16g00325 Cpe-Chr16:5096653 Cpe05g01363 Cpe-Chr5:9586872 2.63E-132 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00325 - K01102 csv:101221640 675.626