Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe16g00325 | TATTATTTGAGGTTTGTTCGACTCTTTGTTTGTGGGTGTGTTGAGCACAGTGGCGTGGAGCCCATTGCTGGACCTCTGCTTTGCTGGCTTCAAGCTCTCCATTGTTGGTCTTTTATGGGGCTTGTCTGCCTTTCACCGAGGGAGAGAGAAAGGGAGGATGCTGATATTTTGGAGGGTTGTTTGGATGAGATGAGGGATGTTCTCAGGGTTGATGAACTTTCTGAGAGCTTGTTTTCGACCGCGGTCAGATCGACATGTGCACAAAGGTTCAGAGGCTGGTGGTCGACAGGATGGTCTCTTATGGATAGTGGACAGCATGCCAATGGTGAGTTTTCAATGGCTGTAGTTCAGGCTAATAATTTACTTGAGGATCAAAGCCAGATGGAGTCAGGGAATTTGAGCTTGCACGAGGCTGGGCCATATGGTACCTTTGTTGGTGTGTATGATGGGCATGGAGGGCCAGAGACATCTCGCTATGTAAATGATCATCTTTTCCAGCATCTTAAAAGGTTTGCTTCCGAGCAACAGTCCATGTCGGTGGATGTCATACGAAAGGCGTTTCAAGCTACCGAAGACGGGGTTATCGCTCAAGTTTCAAAACAATGGTCAATGAGGCCACTAATTGCAGCTGTTGGATCTTGCTGCCTTGTAGGTGTAATTTGTGGTGGAACTCTTTACATAGCTAACCTTGGTGATTCACGAGCTGTTTTAGGGAGAGTTGTAAAGGCAACAGGGGAAGTTTTGTCTGTCCAGTTGTCTGCTGAGCATAATGCATCTATAGAGTCTGTCAGGCAGGAGCTCCGGGCCCTGCACCCTGATGATCCACATATTGTAGTCTTGAAGCATAATGTATGGCGTGTGAAGGGCCTTATACAGGTTTCTCGATCCATCGGTGATGTCTATTTAAAGAGAGCTGAGTTCAACCGAGAGCCTCTATATGCTAAGTTTCGCCTTCGTGAACCTATCAAAACGCCCATACTGAACGCCGAACCATCTATTTCAGTGCTACAATTGCAACCACAGGATCAATTTATTATATTTGCTTCAGATGGGCTCTGGGAACACCTTAGTAATCAGGAAGCTGTTGATATTGTCCAAAACCATCCACGTAATGGAAGTGCAAGGAGGTTAGTGAAAGCAGCACTGCAAGAGGCAGCAAAGAAGAGAGAAATGAGGTACTCCGATTTGAAGAAGATTGACCGTGGCGTACGACGACATTTCCACGATGACATCACAGTGATTGTTGTGTTTCTCGACTCGAACCTTGTGAGCCGGGCTAGCTCTACAAAATGTGCAAGCCTATCCATGCGAGGGGGCGGAGTTAACTTGCATCCGAACTCATTGGCCCCTGGCATGGCCTGA | 1362 | 47.14 | YYLRFVRLFVCGCVEHSGVEPIAGPLLCWLQALHCWSFMGLVCLSPREREREDADILEGCLDEMRDVLRVDELSESLFSTAVRSTCAQRFRGWWSTGWSLMDSGQHANGEFSMAVVQANNLLEDQSQMESGNLSLHEAGPYGTFVGVYDGHGGPETSRYVNDHLFQHLKRFASEQQSMSVDVIRKAFQATEDGVIAQVSKQWSMRPLIAAVGSCCLVGVICGGTLYIANLGDSRAVLGRVVKATGEVLSVQLSAEHNASIESVRQELRALHPDDPHIVVLKHNVWRVKGLIQVSRSIGDVYLKRAEFNREPLYAKFRLREPIKTPILNAEPSISVLQLQPQDQFIIFASDGLWEHLSNQEAVDIVQNHPRNGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSNLVSRASSTKCASLSMRGGGVNLHPNSLAPGMA | 453 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 5096653 | 5100850 | + | Cp4.1LG16g03220.1 | Cpe16g00325 | 482700 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe16g00325 | 453 | Gene3D | - | 97 | 430 | IPR036457 | - | |
| Cpe16g00325 | 453 | SUPERFAMILY | PP2C-like | 121 | 419 | IPR036457 | - | |
| Cpe16g00325 | 453 | CDD | PP2Cc | 111 | 418 | IPR001932 | - | |
| Cpe16g00325 | 453 | PANTHER | ALPHABET, ISOFORM E-RELATED | 101 | 447 | - | - | |
| Cpe16g00325 | 453 | Pfam | Protein phosphatase 2C | 142 | 387 | IPR001932 | - | |
| Cpe16g00325 | 453 | ProSiteProfiles | PPM-type phosphatase domain profile. | 110 | 418 | IPR001932 | - | |
| Cpe16g00325 | 453 | SMART | PP2C_4 | 102 | 416 | IPR001932 | - | |
| Cpe16g00325 | 453 | ProSitePatterns | PPM-type phosphatase domain signature. | 144 | 152 | IPR000222 | GO:0043169 | |
| Cpe16g00325 | 453 | PANTHER | PROTEIN PHOSPHATASE 2C FAMILY PROTEIN | 101 | 447 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe04g00604 | Cpe16g00325 | CCT | |
| Cpe15g00605 | Cpe16g00325 | CCT | |
| Cpe05g01363 | Cpe16g00325 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe14g01040 | Cpe-Chr14:8734462 | Cpe16g00325 | Cpe-Chr16:5096653 | 0 | dispersed | |
| Cpe16g00325 | Cpe-Chr16:5096653 | Cpe17g00072 | Cpe-Chr17:417449 | 2.45E-143 | dispersed | |
| Cpe10g00688 | Cpe-Chr10:3957063 | Cpe16g00325 | Cpe-Chr16:5096653 | 7.62E-114 | wgd | |
| Cpe15g00605 | Cpe-Chr15:6773776 | Cpe16g00325 | Cpe-Chr16:5096653 | 1.72E-113 | wgd | |
| Cpe16g00325 | Cpe-Chr16:5096653 | Cpe19g00880 | Cpe-Chr19:6451702 | 0 | wgd | |
| Cpe16g00325 | Cpe-Chr16:5096653 | Cpe04g00604 | Cpe-Chr4:6319570 | 1.82E-110 | wgd | |
| Cpe16g00325 | Cpe-Chr16:5096653 | Cpe05g01363 | Cpe-Chr5:9586872 | 2.63E-132 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe16g00325 | - | K01102 | csv:101221640 | 675.626 |