Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00329 ATGATCCTGATTGGGTCTCCGTTGGGAATGGGAACCATCTCCTACAATCCCTTCTTCTCGAACAGATTGCGAAGTAGATTTTACAGCACAGCTCGTTCTAGGCACCGTCTCTGCGTTAATGGAGGAGAAGATCGAAAGAAGAAAAAGGTCGTCGTCGTCGGCTCCGGCTGGGCTGGCCTTGCCGCTGCTAATCACCTCTGCAATCAGGGATTTGATATCACTGTTCTTGAACCCGGCAATGATTATGGTGGTGCTGACAATCATGGAATTCGTGGTTACTGGCGTCCCTACAAGAACATATTTGGCCTCGTTGATGAGCTTGGTATCACTCCTTTCACAAACTGGACAGCACCTGCTCATTATTCAGCTGATGGATTGGAGGTAAAATTTCCAATATTTCAAGATGTGCCTCAACTGCCAACTCCTCTCGGAACCTTATATTATACAGAATTTCTCCAACTCCCGTTGTTGGATCGCTTATCGTCACTTCCTTTGATGGCTGCAGTGGTTGACTTTGACAACACGGATACAGCGTGGAGAAAATACGACTCAATTACCGCCCGGGAGCTATTCAAGCAGTTCGGCTGTTCGGGAAGGCTCTATAGTAGCATACTCAATCCATTGCTTCAAGTAGGACTATTTGCTCCAGCCGAGCAATGCAGTGCTGCAGCAACCTTGGGAAACTTATACTATACTATCCTTGCTCACCAGAAAGATTTTAATCTAGTCTGGTGTCGTGGAACTGTTAAAGAGAGAATTTTCCAGCCATGGATTGACTTGCTGGAAAGCAAGGGATGTAAATTTGTTAGGAGGAGCAAAATCACAGATGTAATTGTAGATGATGATACAAATCGTCTCTCGGACGTTTTTTGTGGCGGAAAAAGATACGAGGCCGATGCAGTTGTTTTCGCTGTCGGAATTTCTATACTTCAAGAACTCGTTCGTAATTCGGCAGCATTACAAACAAAAGAGGAGTTCCTCAAGGTTTTGAACTTAAGAACAGTTGATATGCTGACTGTTAAGCTTTGGTTTGACAGAAAAGTTAATATTCCGAATTCGAGTAATTCTTGCTCCGCGTTGGATAATTCATTTGGGTGGAGTTTCTTCGACTTGAATGCCATTCAAGACGAACACAAAGATGAATCAGTTACAGTCTTGCAAGCTGACTTTTATCATGCCAACGAGCTGATGCTGCTGAACGAAGAAGTTATAGTCGAAAAGGTGAAATCTTACCTCTCAACGTGCGTTAAGGACTTCGAGAATGCCATCGTAGTGAAGAAGGAAATCGGAAAGTTTCCAGCAACATTGACTCACTTCTTTCCTGGTTCATACAAGTACCGGATGTACGGGTTCACATCGTTCTCAAATGTATTCATGGCCGGAGACTGGATCATAAACCGTCATGTAGAGGAGGATGAGCCTCACGTGGAGGCTCTTCGTGGTCTCAACAGAAGGATTGGTGAGATTAGATCCCAACTCCCATTGGACGGCTTCTTCCTCTAA 1503 44.58 MILIGSPLGMGTISYNPFFSNRLRSRFYSTARSRHRLCVNGGEDRKKKKVVVVGSGWAGLAAANHLCNQGFDITVLEPGNDYGGADNHGIRGYWRPYKNIFGLVDELGITPFTNWTAPAHYSADGLEVKFPIFQDVPQLPTPLGTLYYTEFLQLPLLDRLSSLPLMAAVVDFDNTDTAWRKYDSITARELFKQFGCSGRLYSSILNPLLQVGLFAPAEQCSAAATLGNLYYTILAHQKDFNLVWCRGTVKERIFQPWIDLLESKGCKFVRRSKITDVIVDDDTNRLSDVFCGGKRYEADAVVFAVGISILQELVRNSAALQTKEEFLKVLNLRTVDMLTVKLWFDRKVNIPNSSNSCSALDNSFGWSFFDLNAIQDEHKDESVTVLQADFYHANELMLLNEEVIVEKVKSYLSTCVKDFENAIVVKKEIGKFPATLTHFFPGSYKYRMYGFTSFSNVFMAGDWIINRHVEEDEPHVEALRGLNRRIGEIRSQLPLDGFFL 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5110327 5115965 + Cp4.1LG16g03360.1 Cpe16g00329 482704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00329 500 PANTHER PROTOPORPHYRINOGEN OXIDASE 26 468 - -
Cpe16g00329 500 PANTHER OS04G0560500 PROTEIN 26 468 - -
Cpe16g00329 500 Pfam Flavin containing amine oxidoreductase 58 466 IPR002937 GO:0016491
Cpe16g00329 500 SUPERFAMILY FAD/NAD(P)-binding domain 45 468 IPR036188 -
Cpe16g00329 500 Gene3D - 43 461 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00329 - - - bhj:120089282 858.596
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00043 Cpe-Chr4:431870 Cpe16g00329 Cpe-Chr16:5110327 4.64E-08 dispersed
Cpe16g00329 Cpe-Chr16:5110327 Cpe07g00378 Cpe-Chr7:2440761 1.56E-06 dispersed
Cpe16g00329 Cpe-Chr16:5110327 Cpe08g00053 Cpe-Chr8:348059 4.74E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g190 . . . Bda08g00982 . . . . . . . Cma20g00737 . Car20g00639 . . . . . . . . . . . . . . . . . . . . . Lsi10g00509 . Chy11g00241 . . . . . . Bpe05g00298 . . . . Cmo20g00734 . . . . Cpe16g00329 . . . . . . . . Cla02g01184 Cam02g1261 Cec02g1272 Cco02g1310 Clacu02g1243 Cmu02g1210 Cre02g1525 . Csa02g01408 . Cme11g00364
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011350 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 4 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00329 Cpe_Chr16 FPKM 76.626083 85.352631 73.207779 85.2061 67.466316 64.396523 65.286308 71.691971 85.105499 79.089485