Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00335 ATGGATTTCTCTCTTAAGGCATTCAAATCCCACGGCTCTTATAAGTATGTGAGGAAGCTTTCTGGAACAGACTCTACTCAAGATCAAGAACAGCTTCCGATTCTTTCAGATCAGGAGCCGAATAATCTTCACCAGAAACGGTCGTTTATGGCGGTGTCCGATGCATCTGACAGGAAGGAGGTCATTGTCAAGGTCGATGAAGCCGATGCTTCGAGTAATGCATCTGCGAGAGCTGTGGAGTCGGTGAACTCCAGTGGGAGGATTTGGCGGGAGTCGAGCTATGATTTCTGGAATGATAGTGATAGTAAACGGAATAATGGTGAAGGTAGTAATGGCGATGGTGGTAAGGGTGAGGATTTTGAGTTTAGGCAACAGAGGAAGGATGTGGAAGATCCGCCTTCCAAGCTTATTGGACAGTTTCTGCATAAGCAGAAGGCGTCGGGAGAGATGTGTTTGGATATGGATATGGAAATGCTGGAACTACCACATGATAAGACTCTGCCTACGGTGGCAGAATCTCCGATGCGACGGAGTTCGAAAGAGTTGAAGGTCTCGTTTGAGTCTATTTCAGAGATTTCCGAAAGCGATTCGCTGCGAAGACGACATAGAGACTCGCCGGTCGATGAAGAACATAGAGTACAGCAACCGCCGCAGCGTGACCATCGACCGCATGGCAATGGTCATGATGACGGTGCTGCTGAGGTTGTGAGATGCACATCTAATTCATCGTTCGAGAGGAATGTATCGTTCCAGCGGAAATCTAGCTTGCTGAAGACTAAAACTAAGTCCAGATTGCTGGACCCGCCCGAACACCAGGACAGGAGGTCAGGGCGTGTACCAAAATCAGGGCAAATCCGCTCTGGTTTATTGTCAAAAGCCTTGGATGAGGAAGATGATGATCCATTCTTGGAAGAGGATCTTCCTGATGAGTATAAGAAGGCTAATCTCGGTGTTCTAACTATGCTACAATGGGCGAGTTTGATTCTGATAATCGCGGCATTGATTTGCACTCTAACAATCCGTTACTGGAGGAGAAAGAAGCTATGGAAGCTTGAATTATGGAAATGGGAGGTTATGATTCTAGTTCTGATATGTGGAAGGCTGTTTTCTGGTTGGGGTATTAGGATAATCGTGTTCTTCATCGAGAGAAGCTTTCTACTGCGTAAGAGGGTTCTATACTTCGTTTATGGAGTCAGAAAGGCAGTCCAGAATTGTCTTTGGTTGGGTCTGGTTCTAATTGCTTGGAACTTTCTGTTTGATGACAAAGTTCAAAGAGAAGTAAAGAGCGATGCTCTTGAGTATGTGACCAAAGTCCTGATATGTCTGCTGGTAAGCACTTTGGTTTGGCTGGTGAAAACGCTGATAGTGAAGGTTCTGGCGTCTTCTTTCCATGTGAGTACATATTTCGATAGGATTCAGGATGCATTGTATAACCAATATGTGATCGAGACACTGTCAGGGCCGCCATTGATAGAGATTCAAAAGAGCAAGGAAGAAGAAGAGAAGCTTGCAGAAGAGGTTATGAAGTTACAGAATGCAGGGGCCACTATTCCTCCTGATCTAAGGGCATCTGCCTTTTCAAGTCCAGAGGGTGGAAGGGTAATAGGGAGTGGAGGGCTACAGAAAAGTCCCCGTGGAAGGAGTGCCAAGCTTTCTCGGGCGCTATCCAAGAAAGGGGATGAGGGTATAACTATTGATCACTTGCATAGGCTTAGTCCTAAGAATGTGTCTGCTTGGAATATGAAGAGGTTGATGAACATTGTCCGACATGGGGCGCTTTCAACTTTGGATGAACAGATAAAGGATTCAGCTCATGAGGATGAATCAACTACCCAGATCAAGAGTGAGTATGAGGCAAAAGTTGCTGCTAAGAGGATTTTTCAGAACGTGGCTTCGCAGGGTTCCAAATATATCTACCTAGAGGACTTGATGCGTTTCATGGTAGAAGATGAAGCTTCAAAAACCATGAGTCTATTTGAAGGAGCATCTGAGAGTAGGAAAATAAGCAAATCATCCTTGAAAAACTGGGTGGTCAATGCCTTTAGAGAACGGAGGGCACTAGCTTTGACACTGAACGATACCAAAACAGCTGTGAACAAACTTCACCGCATGGTGAATATTTTAGTTTCTGTCATTATTCTGGTAATTTGGCTACTGATTCTGGGTATAGCCACCAGCAAGTTTCTCCTATTTGTAACCTCTCAGCTTGTACTGGTCGCATTTGTATTTGGAAATACTTGCAAGACTGTTTTTGAAGCAATCATCTTCTTATTTGTGATGCATCCATTCGATGTTGGAGACCGATGCGAAATCGATGGCGTGCAGATGATTGTTGAAGAAATGAACATTTTGACGACCGTTTTTCTACGATTCGACAACCAGAAGATCATATTTCCGAATAGCGTTCTCGCAACGAAGGCCATCCACAACTACTACCGCAGTCCCGACATGGGTGACGCCGTAGAATTCTGTCTTCACATATCTACTCCACCTGAGAAAATTGCCATCATGAGACAGAGAATACTAGGTTTCATTGAAGGCAAGAAGGAGCACTGGTGTCCTGCGCCATTGATTATCCTAAAGGATGTAGAAGAATTGAATAGAATGAGAATAGCAATATGGCTTACTCACAGAATGAACCATCAAGACATGGGAGAGAGGTGGACTAGGAGAGCCTTCTTGGTTGAAGAACTGGTTAAAATTTTCCAAGAGCTCGACCTGCAATATCGTCTCCTACCGCTCAATATCAACGTCTGTTCCTTGCCTCCAGTGAACTCTACTAGGCTTCCAGCTACTTGGGGAGCCACTGCAAGTTGA 2817 44.87 MDFSLKAFKSHGSYKYVRKLSGTDSTQDQEQLPILSDQEPNNLHQKRSFMAVSDASDRKEVIVKVDEADASSNASARAVESVNSSGRIWRESSYDFWNDSDSKRNNGEGSNGDGGKGEDFEFRQQRKDVEDPPSKLIGQFLHKQKASGEMCLDMDMEMLELPHDKTLPTVAESPMRRSSKELKVSFESISEISESDSLRRRHRDSPVDEEHRVQQPPQRDHRPHGNGHDDGAAEVVRCTSNSSFERNVSFQRKSSLLKTKTKSRLLDPPEHQDRRSGRVPKSGQIRSGLLSKALDEEDDDPFLEEDLPDEYKKANLGVLTMLQWASLILIIAALICTLTIRYWRRKKLWKLELWKWEVMILVLICGRLFSGWGIRIIVFFIERSFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDDKVQREVKSDALEYVTKVLICLLVSTLVWLVKTLIVKVLASSFHVSTYFDRIQDALYNQYVIETLSGPPLIEIQKSKEEEEKLAEEVMKLQNAGATIPPDLRASAFSSPEGGRVIGSGGLQKSPRGRSAKLSRALSKKGDEGITIDHLHRLSPKNVSAWNMKRLMNIVRHGALSTLDEQIKDSAHEDESTTQIKSEYEAKVAAKRIFQNVASQGSKYIYLEDLMRFMVEDEASKTMSLFEGASESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNILVSVIILVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTVFLRFDNQKIIFPNSVLATKAIHNYYRSPDMGDAVEFCLHISTPPEKIAIMRQRILGFIEGKKEHWCPAPLIILKDVEELNRMRIAIWLTHRMNHQDMGERWTRRAFLVEELVKIFQELDLQYRLLPLNINVCSLPPVNSTRLPATWGATAS 938
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5154578 5159120 - Cp4.1LG16g03410.1 Cpe16g00335 482710

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00335 938 Gene3D - 762 811 IPR023408 -
Cpe16g00335 938 MobiDBLite consensus disorder prediction 263 280 - -
Cpe16g00335 938 MobiDBLite consensus disorder prediction 193 231 - -
Cpe16g00335 938 MobiDBLite consensus disorder prediction 99 137 - -
Cpe16g00335 938 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 170 - -
Cpe16g00335 938 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 200 936 - -
Cpe16g00335 938 PIRSF Memb_At2g17000 44 938 IPR016688 -
Cpe16g00335 938 SUPERFAMILY Sm-like ribonucleoproteins 752 811 IPR010920 -
Cpe16g00335 938 Coils Coil 493 513 - -
Cpe16g00335 938 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 200 936 IPR016688 -
Cpe16g00335 938 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 5 170 IPR016688 -
Cpe16g00335 938 MobiDBLite consensus disorder prediction 114 133 - -
Cpe16g00335 938 Pfam Mechanosensitive ion channel 704 906 IPR006685 GO:0016020|GO:0055085
Cpe16g00335 938 MobiDBLite consensus disorder prediction 259 284 - -
Cpe16g00335 938 MobiDBLite consensus disorder prediction 166 232 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00335 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101210264 1514.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00335 Cpe-Chr16:5154578 Cpe18g00332 Cpe-Chr18:4787006 0 dispersed
Cpe16g00335 Cpe-Chr16:5154578 Cpe04g00610 Cpe-Chr4:6360754 0 wgd
Cpe16g00335 Cpe-Chr16:5154578 Cpe06g00045 Cpe-Chr6:232841 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g216 . Blo15g00394 Bda06g00468 . Bpe07g00704 . . Bma12g00910 . Cmo11g01757 . . . . Sed01g2461 . . Bhi05g01669 Tan02g0642 Cmetu01g0333 . . . . Cla02g00401 Cam02g0406 Cec02g0406 Cco02g0422 Clacu02g0409 Cmu02g0405 Cre02g0740 Cone12ag1250 . Cone3ag0976 Cone10ag1228 Lsi10g00810 . . Cme01g01219 . . . . Bpe15g00798 . . . . . . Cma11g01360 . . . Cpe16g00335 . . . . . . . . . . . . . . . . . Chy01g00654 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe07g00725 . 149 501 Mechanosensitive Ion Channel Family AT4G00290 63.0 5.1e-133 471.9
Cpe14g00646 . 64 727 Mechanosensitive Ion Channel Family AT5G10490 59.8 4.0e-197 685.3
Cpe11g00479 . 10 701 Mechanosensitive Ion Channel Family AT5G10490 55.4 8.9e-189 657.5
Cpe07g00169 . 61 698 Mechanosensitive Ion Channel Family AT5G10490 52.9 1.8e-173 606.7
Cpe11g00479 . 10 681 Mechanosensitive Ion Channel Family AT1G58200 57.0 1.6e-198 689.9
Cpe14g00646 . 6 696 Mechanosensitive Ion Channel Family AT1G58200 52.2 1.2e-177 620.5
Cpe07g00169 . 10 514 Mechanosensitive Ion Channel Family AT1G58200 59.8 1.4e-170 597.0
Cpe16g00335 . 50 938 Mechanosensitive Ion Channel Family AT1G53470 56.0 1.1e-263 906.7
Cpe16g00335 . 50 933 Mechanosensitive Ion Channel Family AT3G14810 52.5 1.5e-246 849.7
Cpe16g00335 . 50 938 Mechanosensitive Ion Channel Family AT1G78610 58.7 9.3e-284 973.4
Cpe04g00610 . 65 911 Mechanosensitive Ion Channel Family AT1G78610 51.3 1.5e-225 780.0
Cpe16g00335 . 229 933 Mechanosensitive Ion Channel Family AT2G17000 59.6 1.1e-233 807.0
Cpe04g00610 . 270 905 Mechanosensitive Ion Channel Family AT2G17000 56.0 2.0e-193 673.3
Cpe02g00286 . 69 720 Mechanosensitive Ion Channel Family AT5G19520 50.7 1.4e-174 610.5
Cpe18g00332 . 58 753 Mechanosensitive Ion Channel Family AT5G12080 54.2 3.1e-203 705.7
Cpe02g00286 . 64 720 Mechanosensitive Ion Channel Family AT5G12080 54.3 3.7e-188 655.6
Cpe04g01033 . 104 797 Mechanosensitive Ion Channel Family AT5G12080 51.0 4.2e-184 642.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00335 Cpe_Chr16 FPKM 2.477447 2.500126 9.403893 9.265902 8.770782 10.330338 10.56126 11.457956 9.38482 9.654136