Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00345 ATGGTCGGCGTAAGATCTGAGGTAATCGAGAACTCGATTTTATCTCGGAAATTCTTCAGTCACCGATTTTGGCCAGGGGAAATCGGAGAACTGAAACAACTCTTTGGACGTCTGCAGCGCCGTCGTCTCCTCGGTCCAAACGCCGCCAATGGCGCCTCTGGCCTCGAAGACAATGGGAGTGAATTTGCAGGCCGCGAATCCGCTTATTCCGGCGCCGATTATCGCGACTTTATTTGGGGACTGAAGTTTACTGGGCTAAGAATCGCCATGGCTTTAAACCTTCGCCAGAAGCAAACAGAATGTATCATTCGAATGTTGAATTTAAACCAGCCGGTGAACTCAACATCGACCGGGAACGAAGAAGAGGTTTACAAGATGTTGATCTTCGATAGATTTTGCCAGAATGTATTGTCCCCTTTGATTCATGTTAAAGACCTTCGAAAACATGGGATTACGCTTTATTTTCTCATCGACAAGGATAGAAAACCTGTTCACGATGTTCCCGCAGTCTATTTCGTCCAACCGAGTAAGAACAACATAGATAGAATTGTTGCTGATGCTTCTCGCTTCCTCTATGATAATTTTTACTTGAACTTCTCTTCTTCTATTCCTCGTCCTCTTCTTGAGGATCTCGCATCTGGTACGCTGAATTCGGATTCGATACAACGAATCTCGAAGGTGCACGACCAGTATTTGGAGTTCATTACATTGGAAGATAATTTGTTTTCGTTAGCACAGAAGAATATATATGTCCAATTGAACGATCCCTCTGCTGGAGATCGTGAAATTGAGGAGATTATAGAGAGAATCGTGAGTGGATTGTTCAGTGTTTTGGCTACGCTTGCTGTTGTGCCTGTTATTCGATGCCAACGAGGAGGGCCGGCGGAAATGGTTGCCTCGGCATTGGATCAGAGGTTGAGAGATCATTTGTTGTCGAAGAACAACTTGTTTACAGAAGGTGGGGGCTTTGCTAGCTCCTTCCAGCGTCCGATTTTGTGTCTGTTTGATCGAAATTTTGAGTTATCTGTAGGAATACAGCATGATTTTAGGTACAGACCTTTAGTTCATGATGTTCTAGGATTGAAGCTGAATAGACTGAGTGTGCAGGGTGAAAAGGGTGGGATGAAATCATATGAATTAGATAGTTCAGACCCATTTTGGGTAGCCAATGGGTCTTTAGAATTTCCAGAAGTTGCAGTGGAGATTGAAACTCAGTTGAATAAGTATAAGAAAGATGTTGATGAGGTGAATAGAAGAACTGGTGGGACTGATGGAGCTGAGTTTAATGGAACAGATTTGATTGGGAACACAAAGCATTTGATGAATGCTGTAAACTCATTGCCAGAATTGACTGAAAGGAAGCAAATTATTGATAAGCATACAAACATTGCTACTGTATTGTTGGGTGAGATCAAGGAGAGGTCTCTTGATTCATATGCTAAGAAGGAGAACGATATGATGTCCCGAGGAGGTATCGATCGGAACGAGCTCTTGAGTGCACTCAAAGGGAAGGGTACGAAGACGGATAAGCTCCGATTTGCTGTTATATATCTTATCTCTTCTGAAAGTATAAACCAATCTGAAGTGGAAGCTGTGGAAGCTGCCCTGAGGGAATCGGAAGTTGATATTAGTGCATTTCAGTATGTTAAGAAGATCAAGTCGTTGAATGTTGCATTCACATCAGCAAATTCAGCTAGCAGAAGCAACATTGTGGATTGGGCTGAGAAACTCTATGGACAGTCGATTAGTGCAATGACTGCTGGTGTTAAAAATCTTTTGTCTAGTGATAGGCAGCTTGCACTGACTCGGACGGTAGAGGGGTTGATGGAAGGAAAACCGAATCCCGAAATCGATACTTTTCTTACGTTCGATCCACGTGCGCCGAAGTCGAGTTCCGGAACGAGTAGCAGCCATTTGAAAGGACCATTCAAAGAAGCTATTGTGTTCATGATTGGAGGGGGTAACTACGTCGAGTACGGGAGCTTGCAAGAGCTGGCAACAAATCAGCAGCCCGTCAAACATATCATATATGGTAGCACTGAAATCCTCACTGGAGTCGAGTTCGTCGAGCAGCTTTCGTTGTTGGGGCAGAAGATGGGACTTGGCAATGTTACTGCTGCTACTGCTCCTCCTCCTCCTCCAGGTCGTTAA 2151 44.12 MVGVRSEVIENSILSRKFFSHRFWPGEIGELKQLFGRLQRRRLLGPNAANGASGLEDNGSEFAGRESAYSGADYRDFIWGLKFTGLRIAMALNLRQKQTECIIRMLNLNQPVNSTSTGNEEEVYKMLIFDRFCQNVLSPLIHVKDLRKHGITLYFLIDKDRKPVHDVPAVYFVQPSKNNIDRIVADASRFLYDNFYLNFSSSIPRPLLEDLASGTLNSDSIQRISKVHDQYLEFITLEDNLFSLAQKNIYVQLNDPSAGDREIEEIIERIVSGLFSVLATLAVVPVIRCQRGGPAEMVASALDQRLRDHLLSKNNLFTEGGGFASSFQRPILCLFDRNFELSVGIQHDFRYRPLVHDVLGLKLNRLSVQGEKGGMKSYELDSSDPFWVANGSLEFPEVAVEIETQLNKYKKDVDEVNRRTGGTDGAEFNGTDLIGNTKHLMNAVNSLPELTERKQIIDKHTNIATVLLGEIKERSLDSYAKKENDMMSRGGIDRNELLSALKGKGTKTDKLRFAVIYLISSESINQSEVEAVEAALRESEVDISAFQYVKKIKSLNVAFTSANSASRSNIVDWAEKLYGQSISAMTAGVKNLLSSDRQLALTRTVEGLMEGKPNPEIDTFLTFDPRAPKSSSGTSSSHLKGPFKEAIVFMIGGGNYVEYGSLQELATNQQPVKHIIYGSTEILTGVEFVEQLSLLGQKMGLGNVTAATAPPPPPGR 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5233611 5236612 + Cp4.1LG16g03480.1 Cpe16g00345 482720

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00345 716 SUPERFAMILY Sec1/munc18-like (SM) proteins 90 698 IPR036045 -
Cpe16g00345 716 Coils Coil 399 419 - -
Cpe16g00345 716 Gene3D - 474 599 - -
Cpe16g00345 716 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 348 592 IPR043127 -
Cpe16g00345 716 PANTHER SEC1 FAMILY TRANSPORT PROTEIN SLY1-LIKE 92 700 - -
Cpe16g00345 716 Gene3D - 92 226 IPR043154 -
Cpe16g00345 716 Gene3D - 237 694 IPR027482 -
Cpe16g00345 716 PIRSF VPS45_Sec1 92 703 IPR001619 GO:0016192
Cpe16g00345 716 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 92 700 IPR001619 GO:0016192
Cpe16g00345 716 Pfam Sec1 family 125 691 IPR001619 GO:0016192
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00345 K19998 SCFD1, SLY1; sec1 family domain-containing protein 1 - csv:116403874 1143.26
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01342 Cpe16g00345 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00345 Cpe-Chr16:5233611 Cpe17g00312 Cpe-Chr17:2116966 2.09E-20 dispersed
Cpe16g00345 Cpe-Chr16:5233611 Cpe04g00627 Cpe-Chr4:6496548 0 wgd
Cpe16g00345 Cpe-Chr16:5233611 Cpe05g01342 Cpe-Chr5:9444374 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g228 . . . . . . . . . . . Cma20g00720 . Car20g00621 . . . . . . . . . . . . . . . . . . . . . . . . . Blo04g00602 . . . . . . . Sed05g3003 . Cmo20g00718 . . Car11g01407 . Cpe16g00345 Cpe05g01342 Bhi10g01246 Tan05g1061 Cmetu10g1643 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002622 0 2 2 1 1 2 3 2 2 2 2 2 3 2 1 3 2 2 3 2 2 2 2 1 2 2 2 2 2 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00345 Cpe_Chr16 FPKM 14.420081 14.151254 7.746254 7.713935 13.993838 13.353024 13.666608 33.713577 32.756794 32.197407