Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00346 ATGCCCAGGCCGGGTGAGGGAGACCTGCGGCCGGTCACGCTCATTCCTGGAGACGGAATCGGTCCTCTGGTGACTAATGCGGTCGAGCAAGTGATGGAGGCGATGCACGCTCCTGTATACTTTGAGCGTTACGAAGTCCATGGCGATATGAAGGAGGTTCCTCGAGAGGTAATGGAGTCTATTTTGAAGAATAAAGTGTGTTTGAAAGGCGGACTGATGACTCCGATGGGCGGCGGTGTTAGTTCACTCAATGTGCAACTCAGGAAGGAGCTCGACTTGTATGCCTCGCTTGTTAATTGTTTCAATTTCCCTGGATTGCCCACGCGACATGAGAATGTTGATATCGTCGTCATTAGGGAGAATACGGAGGGTGAGTACTCTGGCCTCGAGCATGAGGTCCTTCCTGGCGTCGTTGAGAGCCTCAAGGTGATCACAAAGTTCTCCTCGGAACGCATTGCCAAATATGCGTTTGAGTATGCTTATCTGAACAACAGGAAGAAAGTGACGGCAGTGCACAAAGCCAACATTATGAAACTTTCAGATGGTTTGTTTTTGGAGTCTTGCAGGGAAGTGGCAACCGAATATCCTAGTATCGAATACAAGGAGGTTATTGTCGACAACTGTTGCATGCAGCTTGTTTCAAAACCTGAGCAATTTGATGTAATGGTGACTCCCAACCTTTACGGCAATCTAGTGGCAAACACTGCAGCTGGTATTGCCGGAGGCACTGGTCTTATGCCAGGAGGGAACGTGGGGTTTGAGCATGCGATATTTGAACAAGGAGCTTCAGCAGGGAACGTGGGGAATGAGAAAATTGTGGAAGAGAAGAAGGCGAACCCAGTGGCATTGCTACTGTCATCGGCCATGATGCTGAGGCACCTTCAGTTTCCTTCTTTCGCTGATAGACTTGAAAATGCTGTGAAACGTGTGATCTTGGAGGGCAATTGCAGGACCAAGGATCTTGGTGGAAACTGCACTACCCAACGGCTTGTCGATGCTGTCATTGCCTATGTGGAGTGA 1020 49.31 MPRPGEGDLRPVTLIPGDGIGPLVTNAVEQVMEAMHAPVYFERYEVHGDMKEVPREVMESILKNKVCLKGGLMTPMGGGVSSLNVQLRKELDLYASLVNCFNFPGLPTRHENVDIVVIRENTEGEYSGLEHEVLPGVVESLKVITKFSSERIAKYAFEYAYLNNRKKVTAVHKANIMKLSDGLFLESCREVATEYPSIEYKEVIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGLMPGGNVGFEHAIFEQGASAGNVGNEKIVEEKKANPVALLLSSAMMLRHLQFPSFADRLENAVKRVILEGNCRTKDLGGNCTTQRLVDAVIAYVE 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5237850 5241121 + Cp4.1LG16g03490.1 Cpe16g00346 482721

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00346 339 PANTHER ISOCITRATE DEHYDROGENASE [NAD] REGULATORY SUBUNIT 1, MITOCHONDRIAL-LIKE 6 337 - -
Cpe16g00346 339 SMART Iso_dh_2 11 334 IPR024084 -
Cpe16g00346 339 Gene3D Isopropylmalate Dehydrogenase 5 337 - -
Cpe16g00346 339 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 6 337 - -
Cpe16g00346 339 Pfam Isocitrate/isopropylmalate dehydrogenase 12 334 IPR024084 -
Cpe16g00346 339 TIGRFAM mito_nad_idh: isocitrate dehydrogenase, NAD-dependent 10 336 IPR004434 GO:0006099
Cpe16g00346 339 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 10 337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00346 K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] - csv:101213909 619.387
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01341 Cpe16g00346 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00346 Cpe-Chr16:5237850 Cpe19g00416 Cpe-Chr19:3772308 1.64E-112 dispersed
Cpe10g00710 Cpe-Chr10:4064422 Cpe16g00346 Cpe-Chr16:5237850 1.14E-81 wgd
Cpe16g00346 Cpe-Chr16:5237850 Cpe19g00893 Cpe-Chr19:6515430 0 wgd
Cpe16g00346 Cpe-Chr16:5237850 Cpe05g01341 Cpe-Chr5:9439065 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g229 . . . . . . . . . . . Cma20g00719 . Car20g00620 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo20g00717 . . . . Cpe16g00346 Cpe05g01341 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001945 2 2 2 1 1 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 2 3 2 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00346 Cpe_Chr16 FPKM 4.373181 5.430414 9.75532 10.22579 15.283985 15.874527 16.139544 5.006567 5.276971 5.448976