Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00348 ATGGAGAATGAATGTGGAGCGAAATTGATCGGAAATAATGGTTTGAGCCCACGTTCATCGGTTTCTAATGGCGGTCCAGATGGAACCGTCGATGTTCTTAAAGATTTGAAGGAAGCTAATGATTTAATCGAGGTTATTGGGGGTTTTTCTGGGTTTCGGAAAACGCAATCCAAGGAGTGTTTGAATTTGGTTAGGAGATTGAAGATGCTCGCGCCGTTGTTGGAGGAGATTCGTGACCTTTATGATATGGTTCCTGCTGAGGGTTTGAGTTCCCATATTGGTCAATTGAAAGAGGCGCTTCTTTTAGCCAAAAGGTTGCTGAAGAATTGCCACAATGGGAGTAAGATTTATCTGGCGTTTGATAATGAAGCTGTGATGGCGAGATTTCATTCTGTTTATGACAAATTGAAGGAAGCCCTTGATGGGATACCTTATGATGAACTTGGAGTCTCTGTTGAACTGAAAGAACAAGTTGAGCTGATGTCGACGCAGCTCAAACGAGCGAAGTGTAGGAAAGATACACAAGATATGGAGTTAGCAATGGATATGATGGTTGTGTTTTCAAAAAATGATGAGAGAAATGCTGATCCTGTTATACTTGGAAGATTAGCAAATAAATTGGAACTGCATAAGGTTGCAGATTTGGAAGCCGAAACCGAAGCTATACAAAAGTTGGTTCAACGTCGATGTGTGTCGAATTCTGAAAATCTCCAGCAAATTATGGAGCTTCTATGCAAGTTTAAGAAAATTGCAGGTATGGAGAATAGTGTTGCTTCTGATGCTGCTCCTGTTGTGTTGAAACGTCTGCAACGGTGTCGGTCTACGTTAATCCCTCATGAATTCCTTTGTCCCATTTCGTTGGAAGTCATGACAGATCCTGTGATTGTGGCTACTGGGCAGACGTACGACCGTGATAGCATACAGACATGGTTGAATTCGAACCACCAGACATGCCCGAAAACAGGACAAACTTTGGTGCATTTGTCACTAGCTCCAAATTATGCCCTCAAGAACCTCATTTTGCAATGGTGTCAAAAGCACGACTATGAATTGCCGAAGAAGGAAGTAGGTTCCGGATTCGGCGATACTCCGCCTGATCTCGCTCGGGAAATCTCCTCTTTAGTTCACAATCTATCGTCGAGTCAGTTGGATGTTCAGAAAGAGGCTATCATCAAGATCCGTGTCCTCTCCAAGGAGAACCCCGAGAATAGAGTTTGGATCGCGAATAGCGGAGTCATCCCTCCGTTGGTTAAGCTTCTATCCTACCCAGATCTCAATTTCCAAGAGCACACGGTGACCGCTCTATTGAACTTGTCGATCGACGACGCGAATAAAAGACTCATAGCAAGAGAAGGAGCCATTCCTGCTATCATAGAAATCTTGCAGCATGGAACAGAGGAGGCTAAGGAGAATTCTGCTGCTGCACTGTTTAGCTTGTCAATGCTAGATGAAAACAAGGTTCTGATTGGAACTCTAAAGGGAATCCCGCCATTAGTAGCGCTTCTTCGAGACGGTACGATCCGAGGGAAGAAGGATGCTGCTACTGCACTCTTTAACCTGTCGATGAATCAAGCAAACAAGTCCCGAGCGATCAAAGCCGGCATCATACAGCCCCTTCTCTTTTTACTTCAAGATAAGAACTTAGGAATGGTTGATGAAGCTTTATCGATCTTGTTACTCCTCGCATCACATCCGGAGGGACGAACCGAGATCGGACGTAACTCTTTCATCGAGATTCTAGTGAACATCATAATCGACGGGACACCGAAGAACAAGGAATGTGCGACGTCGTTACTTCTCGAGCTGGGACGAAACAATTCGCCTTCCATTTTGGTTGCGCTGCAGTTTGGTGTATATGAACATTTGGTAGAGCTGACAAGATGTGGAACAAGTAGAGCACAGAGAAAAGCAAGCTCGCTTTTGCAGTATATGAGCAAATGTGAACACATTCCTTGA 1956 44.27 MENECGAKLIGNNGLSPRSSVSNGGPDGTVDVLKDLKEANDLIEVIGGFSGFRKTQSKECLNLVRRLKMLAPLLEEIRDLYDMVPAEGLSSHIGQLKEALLLAKRLLKNCHNGSKIYLAFDNEAVMARFHSVYDKLKEALDGIPYDELGVSVELKEQVELMSTQLKRAKCRKDTQDMELAMDMMVVFSKNDERNADPVILGRLANKLELHKVADLEAETEAIQKLVQRRCVSNSENLQQIMELLCKFKKIAGMENSVASDAAPVVLKRLQRCRSTLIPHEFLCPISLEVMTDPVIVATGQTYDRDSIQTWLNSNHQTCPKTGQTLVHLSLAPNYALKNLILQWCQKHDYELPKKEVGSGFGDTPPDLAREISSLVHNLSSSQLDVQKEAIIKIRVLSKENPENRVWIANSGVIPPLVKLLSYPDLNFQEHTVTALLNLSIDDANKRLIAREGAIPAIIEILQHGTEEAKENSAAALFSLSMLDENKVLIGTLKGIPPLVALLRDGTIRGKKDAATALFNLSMNQANKSRAIKAGIIQPLLFLLQDKNLGMVDEALSILLLLASHPEGRTEIGRNSFIEILVNIIIDGTPKNKECATSLLLELGRNNSPSILVALQFGVYEHLVELTRCGTSRAQRKASSLLQYMSKCEHIP 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5253031 5256110 + Cp4.1LG16g03470.1 Cpe16g00348 482723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00348 651 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 32 648 - -
Cpe16g00348 651 Pfam Armadillo/beta-catenin-like repeat 441 480 IPR000225 GO:0005515
Cpe16g00348 651 Pfam Armadillo/beta-catenin-like repeat 483 521 IPR000225 GO:0005515
Cpe16g00348 651 Pfam Armadillo/beta-catenin-like repeat 400 439 IPR000225 GO:0005515
Cpe16g00348 651 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
Cpe16g00348 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 493 535 IPR000225 GO:0005515
Cpe16g00348 651 SMART arm_5 523 563 IPR000225 GO:0005515
Cpe16g00348 651 SMART arm_5 441 481 IPR000225 GO:0005515
Cpe16g00348 651 SMART arm_5 606 646 IPR000225 GO:0005515
Cpe16g00348 651 SMART arm_5 564 604 IPR000225 GO:0005515
Cpe16g00348 651 SMART arm_5 400 440 IPR000225 GO:0005515
Cpe16g00348 651 SMART arm_5 482 522 IPR000225 GO:0005515
Cpe16g00348 651 Coils Coil 151 171 - -
Cpe16g00348 651 Gene3D - 510 650 IPR011989 -
Cpe16g00348 651 PANTHER U BOX DOMAIN-CONTAINING 32 648 - -
Cpe16g00348 651 SUPERFAMILY ARM repeat 371 645 IPR016024 -
Cpe16g00348 651 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
Cpe16g00348 651 Pfam U-box domain 277 347 IPR003613 GO:0004842|GO:0016567
Cpe16g00348 651 SUPERFAMILY RING/U-box 277 352 - -
Cpe16g00348 651 Gene3D - 31 144 IPR036537 GO:0007166
Cpe16g00348 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 452 494 IPR000225 GO:0005515
Cpe16g00348 651 Gene3D - 366 508 IPR011989 -
Cpe16g00348 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 411 453 IPR000225 GO:0005515
Cpe16g00348 651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 351 IPR013083 -
Cpe16g00348 651 CDD RING-Ubox_PUB 281 323 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00348 Cpe-Chr16:5253031 Cpe16g00603 Cpe-Chr16:6674165 1.07E-149 dispersed
Cpe16g00348 Cpe-Chr16:5253031 Cpe02g01239 Cpe-Chr2:11139117 1.08E-164 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00348 - - cmax:111483940 1250.34