Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00349 ATGGTTCAGAAATCCATAGACTCCAAATTCAGTGAATATGGACATGGAAATTCTGGGAAGGACGTGCCTTCTCAGGAAAAGCAAATGCAGATTTCTGCAAAGAAGACAGCATTAAGGGACTTGCAAAATGATAATAGGGTCACAGCTTCCCATTGTACTGGAAGCTCTCCTCTTTTGAAGGAAAGAGGTCCGAGTAGTGACTTCATTAAAGTTTCTGGTAACAACCCAGCAACTCCGTCTCATCTCCATTCTTCGACTTCTAATGCTTCAAATGGGCATCTTGTTTACGTCCGTAGAAAGTCCGAGGTAGATATTGGGAAGAATAGTCCTTGTGATAGTACCAACATGAAAGGTGATTATCCAAATCTAAGTAAACTCGGTCAACTAGCTGAAACCGCGCATCTCAAATCCCAGGTTAAGGAGCTACAGAATCATTGCTTTCCAGCATTTGCTCCTTTTCCAATGGTGTCTCCCATGAATGCATCTGGAAAACCTTCAGTTCCTCATCACGTTGGAAAATATGGCATTAATTTCGCCACAGCAGAATCGAACTTCCATCCTGCACCTTCTACTGTCCCTTCAGGATGGAAAAATTTGCAGTGGGAAGACAGATATCATCAGTTGCAATTGTTATTGCATAAATTGGACCAATCAGATCAACAAGATTATCTTCAGGTGCTTCGATCGCTTTCATCGGTTGAACTTAGCAGACATGCAGTCGAATTGGAAAGGAGATCCATTCAGCTCTCGCTTGAAGAAGCAAAAGAGCTGCAGCGAGTTGGGGTTTTGAATGTGCTGGAAAATCCTGTAAAGAGTATCAAAACGCCGTTGACTCATCACGACGGTTCAGAGACGTAA 858 42.77 MVQKSIDSKFSEYGHGNSGKDVPSQEKQMQISAKKTALRDLQNDNRVTASHCTGSSPLLKERGPSSDFIKVSGNNPATPSHLHSSTSNASNGHLVYVRRKSEVDIGKNSPCDSTNMKGDYPNLSKLGQLAETAHLKSQVKELQNHCFPAFAPFPMVSPMNASGKPSVPHHVGKYGINFATAESNFHPAPSTVPSGWKNLQWEDRYHQLQLLLHKLDQSDQQDYLQVLRSLSSVELSRHAVELERRSIQLSLEEAKELQRVGVLNVLENPVKSIKTPLTHHDGSET 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5257552 5261305 + Cp4.1LG16g03460.1 Cpe16g00349 482724

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00349 285 MobiDBLite consensus disorder prediction 21 55 - -
Cpe16g00349 285 PANTHER INTEGRAL MEMBRANE HEMOLYSIN-III-LIKE PROTEIN 1 275 - -
Cpe16g00349 285 PANTHER INTEGRAL MEMBRANE HEMOLYSIN-III-LIKE PROTEIN 1 275 - -
Cpe16g00349 285 Pfam Retinal tissue protein 209 266 IPR018737 GO:0006355|GO:0070176
Cpe16g00349 285 MobiDBLite consensus disorder prediction 68 93 - -
Cpe16g00349 285 MobiDBLite consensus disorder prediction 1 93 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00349 - - - csv:101211824 441.039
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01339 Cpe16g00349 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00790 Cpe-Chr11:6393805 Cpe16g00349 Cpe-Chr16:5257552 8.63E-19 wgd
Cpe16g00349 Cpe-Chr16:5257552 Cpe05g01339 Cpe-Chr5:9428402 7.46E-136 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g283 . . . . . . . . . . Cma02g00297 . Car02g00177 Car20g00617 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo20g00714 . . . . Cpe16g00349 Cpe05g01339 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012474 0 1 1 0 0 1 2 1 1 1 1 1 1 0 1 2 1 1 2 1 1 1 1 1 1 0 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00349 Cpe_Chr16 FPKM 35.129158 35.872066 10.586292 9.800581 3.9438 2.417214 4.472828 0.935002 0.875654 0.568795