Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00350 ATGGATTCTCCTTCCCGTTCTCTGTTTCCCTTCACCGTTTTCCCCCCTCCCTCTCCCTCCCATTCTTCCCTTCCGGCCCCCAATTCCCGCCGGAAGCGGACTAAGTTCATCAGACCCACCACCGCCGCCGCCGCCCCCCCTCTTCATTCTCCGTCCACTCCCAAGTCCAAGCACGCCAAGAAACCGGACCCTACCGCTCCCAAGATCACTCGCCCCTGTACTGAGTGCGGCAAGACCTTCTGGTCATGGAAGGCTCTGTTCGGCCACATGCGCTGCCATCCCGAGCGTCAATGGCGAGGAATCAATCCGCCGCCTAATTTCCGCCGATCGACTGCCACTGACGAAGATCACGAAATCGCTGCCTGTTTGATTATGTTAGCGAATGGCCCTAATGCGATCGATCCTACTGAAGCGGTTACTGAAACGGACGGTGATTGTCGAGAAAATCAAGAATCGGCGGCGGCGGCGTTAGTGTTTGGACAGAGAGGCGTGAAAGAAGAAGAAGAAGATGATGATGATGATGATGATGATGGTTATTTGGACTTGAATTTGCCTCCTCCAATGGAAGACATTGAAGAACATTCTTCATCATCCTATTGTTCAGGGATTGTTTTGGATCTGAGATTAGGGCCTAATTAA 639 52.74 MDSPSRSLFPFTVFPPPSPSHSSLPAPNSRRKRTKFIRPTTAAAAPPLHSPSTPKSKHAKKPDPTAPKITRPCTECGKTFWSWKALFGHMRCHPERQWRGINPPPNFRRSTATDEDHEIAACLIMLANGPNAIDPTEAVTETDGDCRENQESAAAALVFGQRGVKEEEEDDDDDDDDGYLDLNLPPPMEDIEEHSSSSYCSGIVLDLRLGPN 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5262364 5263002 + Cp4.1LG16g03520.1 Cpe16g00350 482725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00350 212 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 23 159 - -
Cpe16g00350 212 SUPERFAMILY beta-beta-alpha zinc fingers 72 96 IPR036236 -
Cpe16g00350 212 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 98 IPR013087 -
Cpe16g00350 212 MobiDBLite consensus disorder prediction 160 197 - -
Cpe16g00350 212 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 23 159 - -
Cpe16g00350 212 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 172 210 - -
Cpe16g00350 212 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Cpe16g00350 212 MobiDBLite consensus disorder prediction 1 70 - -
Cpe16g00350 212 MobiDBLite consensus disorder prediction 166 180 - -
Cpe16g00350 212 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 172 210 - -
Cpe16g00350 212 Pfam C2H2-type zinc finger 72 95 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe15g00638 Cpe16g00350 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g01285 Cpe-Chr8:9285380 Cpe16g00350 Cpe-Chr16:5262364 3.24E-11 dispersed
Cpe14g01063 Cpe-Chr14:8867062 Cpe16g00350 Cpe-Chr16:5262364 3.78E-12 dispersed
Cpe16g00350 Cpe-Chr16:5262364 Cpe18g00770 Cpe-Chr18:7341355 6.01E-08 dispersed
Cpe10g00712 Cpe-Chr10:4077175 Cpe16g00350 Cpe-Chr16:5262364 5.34E-11 wgd
Cpe15g00638 Cpe-Chr15:7110257 Cpe16g00350 Cpe-Chr16:5262364 1.08E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50701 PF13912 zf-C2H2_6 4.30E-08 CL0361 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00350 - - cmax:111484009 366.311