Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00356 ATGGGGCTTGCTCCCCCTTGGCTTGTTCGGTTTTCTTCAGTATCGGCCTCCTCGTTAGTCGACGAGTTCACGAAATTTTGCTATCAGAGGGATCTTCCAAGAGCCATGAAAGCGATGGAAGCGATGCAGAGAAACCGCCTCTGGGCTGATGCAATCACTTACTCCGAGCTTATCAAGTGCTGCCTTGTTCGTGGGGGTGTAGAACAAGGTCGGCTTGTCCATGAGCACGTTTTCTCAAATGGGTACGAGCCCAAAACATTCTTGATCAATACTCTGCTTAACATGTATGTGAAATTTGGTCTATTGGATGAAGCCCAGAAGCTGTTCGACGAAATGCCTGACAGAAATGTTGTCTCATGGACGACTATGATATCTGCTTACTCCAATTCCAGTCTTAATCATATGGCTTTAGAGTTTCTTATATTGATGCTTAGGGAAGGCCCTCAAACACTGAGACCCTCCGGCATAGTTATTGCCATGGGAATCGATGTGAGCTCCAAGAAGAGGAGATCGGATGAGGAAGAAAAGCCCAGTCTCCTCTGA 543 46.96 MGLAPPWLVRFSSVSASSLVDEFTKFCYQRDLPRAMKAMEAMQRNRLWADAITYSELIKCCLVRGGVEQGRLVHEHVFSNGYEPKTFLINTLLNMYVKFGLLDEAQKLFDEMPDRNVVSWTTMISAYSNSSLNHMALEFLILMLREGPQTLRPSGIVIAMGIDVSSKKRRSDEEEKPSLL 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5284327 5288008 + Cp4.1LG16g03510.1 Cpe16g00356 482731

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00356 180 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 85 119 IPR002885 -
Cpe16g00356 180 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, MITOCHONDRIAL 14 160 - -
Cpe16g00356 180 PANTHER OS01G0913400 PROTEIN-RELATED 14 160 - -
Cpe16g00356 180 Pfam PPR repeat 118 147 IPR002885 -
Cpe16g00356 180 Pfam PPR repeat 90 117 IPR002885 -
Cpe16g00356 180 Gene3D Tetratricopeptide repeat domain 18 176 IPR011990 GO:0005515
Cpe16g00356 180 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 50 84 IPR002885 -
Cpe16g00356 180 TIGRFAM PPR: pentatricopeptide repeat domain 89 118 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00356 - - - mcha:111011143 254.603
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00356 Cpe-Chr16:5284327 Cpe20g00674 Cpe-Chr20:4529923 4.43E-08 dispersed
Cpe16g00356 Cpe-Chr16:5284327 Cpe01g02396 Cpe-Chr1:20002836 5.70E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g309 . . . . . . . . . . . . . Car20g00609 . . . . . . . . . . . . . . . . . . . Cone3ag1256 . . . . . . . . . . . . . . . Cmo20g00704 . . . . Cpe16g00356 . . . . . . . . Cla02g01056 . . . . . . . . . Cme11g01030
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003057 1 1 0 0 1 1 2 0 1 2 2 0 1 2 2 2 0 2 1 1 1 1 1 1 1 2 2 0 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00356 Cpe_Chr16 FPKM 0.0 1.416072 0.0 0.699601 0.0 0.0 1.740025 0.0 0.0 0.427786