Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe16g00361 | ATGAAATTGTCAGTGGAAGGTTATCTTGATGATTCTATTCCATGTTCTGGGCTCTTGCATCTAAACAGATCAGATGTCAACAAAAGGATCAAACTACAGAACCGTTTGAACTCAGAACTCAGAAGTGACTTCTTATACATTCTACTGATTTTCTTTGATTCATCTGAGCTGATCCCAGTTCTTCAAATTTCAAGGAACCTTATGGGTCTGTCCAGCCTTCCTGCTCCTTCTGAAGGAGTACTGGGTGTGATCCTTGTAAATACGGCCCTATCAATATCTATCTTCAAAGGCATAGTTCGATCGATTCTCCATGTTGTTGGCATCCATCTCTCGTCGCCTACATTACCATCCTCACCAGATTCCATTGAGAATGCTTCTGAATCCATAGAATTCCATCTTAACCCGAACGGAAGTTACATCGAAGAGTTCCGCAGCCGAATCCCAGCAATTCTGTTTAACAAAGTTCACAGCTGCAAATTGCTAGAACATGACTGCTCGGTCTGCCTAACCCAGTTTGCACCTGATTCAGAGATAAACCATTTATCTTGTGGTCATCTTTTCCATAGAGTGTGCTTGGAAAAGTGGCTGGACTACTGGAACCTTACGTGTCCTCTGTGTCGAACTCCGTTCATGCCCGAAGAAGACACAGCTTCCTGCTTCTGGTGA | 666 | 43.39 | MKLSVEGYLDDSIPCSGLLHLNRSDVNKRIKLQNRLNSELRSDFLYILLIFFDSSELIPVLQISRNLMGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSPTLPSSPDSIENASESIEFHLNPNGSYIEEFRSRIPAILFNKVHSCKLLEHDCSVCLTQFAPDSEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPFMPEEDTASCFW | 221 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 5310864 | 5311988 | - | Cp4.1LG16g03610.1 | Cpe16g00361 | 482736 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe16g00361 | 221 | SUPERFAMILY | RING/U-box | 155 | 213 | - | - | |
| Cpe16g00361 | 221 | SMART | ring_2 | 165 | 206 | IPR001841 | - | |
| Cpe16g00361 | 221 | Pfam | Ring finger domain | 164 | 207 | IPR001841 | - | |
| Cpe16g00361 | 221 | PANTHER | - | 68 | 221 | IPR044249 | - | |
| Cpe16g00361 | 221 | ProSiteProfiles | Zinc finger RING-type profile. | 165 | 207 | IPR001841 | - | |
| Cpe16g00361 | 221 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 131 | 212 | IPR013083 | - | |
| Cpe16g00361 | 221 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED | 68 | 221 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe01g01571 | Cpe-Chr1:9404923 | Cpe16g00361 | Cpe-Chr16:5310864 | 4.03E-21 | dispersed | |
| Cpe15g00675 | Cpe-Chr15:7360788 | Cpe16g00361 | Cpe-Chr16:5310864 | 4.32E-70 | dispersed | |
| Cpe16g00361 | Cpe-Chr16:5310864 | Cpe17g00369 | Cpe-Chr17:2668461 | 2.38E-14 | dispersed | |
| Cpe16g00361 | Cpe-Chr16:5310864 | Cpe04g00657 | Cpe-Chr4:6701276 | 1.52E-59 | wgd | |
| Cpe16g00361 | Cpe-Chr16:5310864 | Cpe05g01385 | Cpe-Chr5:9746425 | 6.76E-95 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe16g00361 | K16285 | - | csv:101216645 | 295.434 |