Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00362 ATGAGCATTGCGGAGACCGACTTGACGGGCGCTGGTCAAAGAATGCTTGGGTCAACTGAAGCCAGTGACGTTTGCAGCCGGGAAAAGTCAAATGTTTTGGATGGATCATCTTCCCTCACTGATTTTCGCTCTAGGCCGCACACTTCAGGCCAGCCAGTTGAATTGGCTAATGTGGCTTTACCCAAGGATCTTTTGAGGCATCACATTTTTGGCATGCAGTTTTGCTGTCCTGGAACGAAAGTTGCTGGATTCTTCGGTGAGGACGATGACCTCTACAAGGAGTTTGATATGGATGAAATGGATTTGAATCTTGAAAATTATGAGGACCTATTTAGTATGAGCCTTAATCATTCTGAAGAATTTTTCGAGAACGGTGGAATTGATAGCCTTTTCGACTCAAGAGGCCTTTCGTTTGAAGATTCAGTTTGCCACAGTGCAGTTGCTGCAGAGGGTTCTTCTGTTGGAGTGGTCAAACCAATGCAGCCAGCCTGCAGCAATGGTGCATCTGCCGACTCGGTGATGAGTACTAAAACTGAACCAATTCTCTGTTTTAATTCAAGGCAAGCCCAATCGGGTGTGTCGTTTTCTGGTCTCCCTGGCGAGAGTAGTGTTGGTGAATATCAGGACTGTGGAGCCTCTTCAATGCTTCTAAGGGGAGAGCCTCCATGGTGTGTCCCTGGCACTGAAACTTCCTTCCCATCTATTGAACGTAACAATGCTGTTCTGCGTTACAAGGAGAAAAAGAAGACGCGCAAGTTCGAGAAAACAGTGAGATACGCCACTCGCAAAGCGAGAGCAGATGGCAGAAGACGTGTGAAGGGACGGTTTGTGAAGGCAGGAGAGGCCTATGATTGCGACCCACTGAACCGGACTAGAAGCTGCTGA 885 47.8 MSIAETDLTGAGQRMLGSTEASDVCSREKSNVLDGSSSLTDFRSRPHTSGQPVELANVALPKDLLRHHIFGMQFCCPGTKVAGFFGEDDDLYKEFDMDEMDLNLENYEDLFSMSLNHSEEFFENGGIDSLFDSRGLSFEDSVCHSAVAAEGSSVGVVKPMQPACSNGASADSVMSTKTEPILCFNSRQAQSGVSFSGLPGESSVGEYQDCGASSMLLRGEPPWCVPGTETSFPSIERNNAVLRYKEKKKTRKFEKTVRYATRKARADGRRRVKGRFVKAGEAYDCDPLNRTRSC 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5315133 5320211 - Cp4.1LG16g03710.1 Cpe16g00362 482737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00362 294 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 13 293 - -
Cpe16g00362 294 Pfam CCT motif 237 279 IPR010402 GO:0005515
Cpe16g00362 294 ProSiteProfiles CCT domain profile. 237 279 IPR010402 GO:0005515
Cpe16g00362 294 MobiDBLite consensus disorder prediction 1 50 - -
Cpe16g00362 294 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 13 293 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g01383 Cpe16g00362 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01453 Cpe-Chr5:10125352 Cpe16g00362 Cpe-Chr16:5315133 1.59E-28 dispersed
Cpe16g00362 Cpe-Chr16:5315133 Cpe16g00455 Cpe-Chr16:5785162 1.01E-27 dispersed
Cpe15g00673 Cpe-Chr15:7348210 Cpe16g00362 Cpe-Chr16:5315133 1.70E-96 wgd
Cpe16g00362 Cpe-Chr16:5315133 Cpe04g00659 Cpe-Chr4:6710458 1.69E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50702 PF06203 CCT 2.80E-16 CL0281 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00362 - - csv:101216401 458.759