Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00362 ATGAGCATTGCGGAGACCGACTTGACGGGCGCTGGTCAAAGAATGCTTGGGTCAACTGAAGCCAGTGACGTTTGCAGCCGGGAAAAGTCAAATGTTTTGGATGGATCATCTTCCCTCACTGATTTTCGCTCTAGGCCGCACACTTCAGGCCAGCCAGTTGAATTGGCTAATGTGGCTTTACCCAAGGATCTTTTGAGGCATCACATTTTTGGCATGCAGTTTTGCTGTCCTGGAACGAAAGTTGCTGGATTCTTCGGTGAGGACGATGACCTCTACAAGGAGTTTGATATGGATGAAATGGATTTGAATCTTGAAAATTATGAGGACCTATTTAGTATGAGCCTTAATCATTCTGAAGAATTTTTCGAGAACGGTGGAATTGATAGCCTTTTCGACTCAAGAGGCCTTTCGTTTGAAGATTCAGTTTGCCACAGTGCAGTTGCTGCAGAGGGTTCTTCTGTTGGAGTGGTCAAACCAATGCAGCCAGCCTGCAGCAATGGTGCATCTGCCGACTCGGTGATGAGTACTAAAACTGAACCAATTCTCTGTTTTAATTCAAGGCAAGCCCAATCGGGTGTGTCGTTTTCTGGTCTCCCTGGCGAGAGTAGTGTTGGTGAATATCAGGACTGTGGAGCCTCTTCAATGCTTCTAAGGGGAGAGCCTCCATGGTGTGTCCCTGGCACTGAAACTTCCTTCCCATCTATTGAACGTAACAATGCTGTTCTGCGTTACAAGGAGAAAAAGAAGACGCGCAAGTTCGAGAAAACAGTGAGATACGCCACTCGCAAAGCGAGAGCAGATGGCAGAAGACGTGTGAAGGGACGGTTTGTGAAGGCAGGAGAGGCCTATGATTGCGACCCACTGAACCGGACTAGAAGCTGCTGA 885 47.8 MSIAETDLTGAGQRMLGSTEASDVCSREKSNVLDGSSSLTDFRSRPHTSGQPVELANVALPKDLLRHHIFGMQFCCPGTKVAGFFGEDDDLYKEFDMDEMDLNLENYEDLFSMSLNHSEEFFENGGIDSLFDSRGLSFEDSVCHSAVAAEGSSVGVVKPMQPACSNGASADSVMSTKTEPILCFNSRQAQSGVSFSGLPGESSVGEYQDCGASSMLLRGEPPWCVPGTETSFPSIERNNAVLRYKEKKKTRKFEKTVRYATRKARADGRRRVKGRFVKAGEAYDCDPLNRTRSC 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5315133 5320211 - Cp4.1LG16g03710.1 Cpe16g00362 482737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00362 294 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 13 293 - -
Cpe16g00362 294 Pfam CCT motif 237 279 IPR010402 GO:0005515
Cpe16g00362 294 ProSiteProfiles CCT domain profile. 237 279 IPR010402 GO:0005515
Cpe16g00362 294 MobiDBLite consensus disorder prediction 1 50 - -
Cpe16g00362 294 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 13 293 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00362 - - - csv:101216401 458.759
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01383 Cpe16g00362 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01453 Cpe-Chr5:10125352 Cpe16g00362 Cpe-Chr16:5315133 1.59E-28 dispersed
Cpe16g00362 Cpe-Chr16:5315133 Cpe16g00455 Cpe-Chr16:5785162 1.01E-27 dispersed
Cpe15g00673 Cpe-Chr15:7348210 Cpe16g00362 Cpe-Chr16:5315133 1.70E-96 wgd
Cpe16g00362 Cpe-Chr16:5315133 Cpe04g00659 Cpe-Chr4:6710458 1.69E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g541 Blo02g00107 . . Bda13g00629 . Bpe15g00764 . . . . Cma02g00242 Cma20g00636 Car02g00129 Car20g00602 . . . . . . . . . . . . . . . . . Cone3ag1271 . Cone8ag1452 Cone12ag1396 . . Chy11g00733 . . . . . Bpe14g00696 . Bma02g01294 . . Cmo02g00244 Cmo20g00608 . . . . Cpe16g00362 Cpe05g01383 Bhi10g01471 . . . Hepe08g0483 . . Cla02g00819 Cam02g0985 Cec02g0874 Cco02g0903 Clacu02g0865 Cmu02g0856 Cre02g1172 . . . Cme11g00764
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe07g00334 CCT 6 333 C2C2-CO-like Transcription Factor Family AT5G15850 50.1 8.4e-45 178.3
Cpe07g00334 CCT 4 333 C2C2-CO-like Transcription Factor Family AT3G02380 50.6 7.7e-43 171.8
Cpe11g00283 CCT 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.1 2.1e-83 306.6
Cpe07g00334 CCT 1 333 C2C2-CO-like Transcription Factor Family AT5G24930 58.9 6.5e-77 285.0
Cpe04g01287 CCT,CST 20 371 C2C2-CO-like Transcription Factor Family AT5G24930 51.3 6.7e-58 221.9
Cpe18g00605 CCT,CST 20 374 C2C2-CO-like Transcription Factor Family AT5G24930 50.4 4.8e-56 215.7
Cpe04g01287 CCT,CST 5 371 C2C2-CO-like Transcription Factor Family AT5G57660 50.1 2.8e-64 243.0
Cpe05g01383 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 5.8e-89 325.1
Cpe15g00673 CCT,CST 1 411 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 3.2e-87 319.3
Cpe04g00659 CCT,CST 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 53.4 2.7e-86 316.2
Cpe16g00362 CST 25 293 C2C2-CO-like Transcription Factor Family AT3G07650 50.5 6.7e-53 205.3
Cpe05g01383 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 1.4e-87 320.5
Cpe15g00673 CCT,CST 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.6 1.1e-84 310.8
Cpe04g00659 CCT,CST 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 5.6e-84 308.5
Cpe16g00362 CST 88 293 C2C2-CO-like Transcription Factor Family AT5G48250 53.6 1.5e-49 194.1
Cpe05g01383 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 1.4e-87 320.5
Cpe15g00673 CCT,CST 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.6 1.1e-84 310.8
Cpe04g00659 CCT,CST 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 5.6e-84 308.5
Cpe16g00362 CST 88 293 C2C2-CO-like Transcription Factor Family AT5G48250 53.6 1.5e-49 194.1
Cpe04g00107 CCT,CST,ECH 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 57.6 2.7e-53 206.5
Cpe15g00559 CCT,CST,ECH 1 206 C2C2-CO-like Transcription Factor Family AT1G75540 52.9 1.2e-48 191.0
Cpe01g00595 CST 1 203 C2C2-CO-like Transcription Factor Family AT1G78600 55.2 5.0e-57 218.8
Cpe01g00702 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 63.0 1.5e-55 213.0
Cpe14g00516 . 1 193 C2C2-CO-like Transcription Factor Family AT2G21320 58.5 1.1e-53 206.8
Cpe19g00845 CST 1 132 C2C2-CO-like Transcription Factor Family AT2G21320 69.7 4.6e-49 191.4
Cpe10g00649 CST 1 109 C2C2-CO-like Transcription Factor Family AT2G21320 78.9 8.8e-48 187.2
Cpe01g00702 . 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 3.2e-56 215.3
Cpe14g00516 . 1 192 C2C2-CO-like Transcription Factor Family AT4G38960 61.5 2.7e-55 212.2
Cpe19g00845 CST 1 151 C2C2-CO-like Transcription Factor Family AT4G38960 66.9 1.5e-50 196.4
Cpe10g00649 CST 1 106 C2C2-CO-like Transcription Factor Family AT4G38960 82.1 3.2e-48 188.7
Cpe04g00107 CCT,CST,ECH 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 59.9 1.4e-54 210.3
Cpe15g00559 CCT,CST,ECH 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 55.6 5.9e-50 194.9
Cpe07g00385 CCT,ECH 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 51.0 1.7e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000824 1 8 2 4 3 2 4 2 2 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 18 2 1 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50702 PF06203 CCT 2.80E-16 CL0281 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00362 Cpe_Chr16 FPKM 16.853121 18.16189 15.395014 14.472934 17.102612 17.419451 17.498497 12.133653 9.889525 10.25071