Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00366 ATGGGGAGATTTTGCCTTCTTTGTATAGGAATGGACAGTGATTTGAACAAAACAACTTACTGTGGGAACAACTTTGTTGCGCTGAGTAACGACAACAAACAAAACATTGATAGGCATTCCCGAGCCGAGATGGGATCGTTCGGCGAGAGAACCATACTTGAATTTGAAGATGAGAGCCTTGTTAGTCCTGTATCATTAAATCGAAAGAATTTTTCTATTGAGCATAGTTCGTCATTGGGTGGTGGTTCACAGAAACTTTGTTATGGCAACATGAAGAACAGGGTATTTCACAGCCTTAAGGTTGTCGTCTTCTCTGCTAAGATCAACTTTCTCATGCCTTTTGGGCCATTAGCCATATTAGTCAGCAGTTTGACTGGTCACCATGGTTGGGTCTTCCTTTTAAGCTTGTTGGGGATCATACCTCTTGCTGAACGTTTGGGCTATGCAACTGAGCAACTGGCATGCTATACTGGAGCCACAGTTGGAGGTCTTCTGAATGCTACTTTTGGAAATGCCACAGAATTGATAATATCAATATACGCATTACGAAGAGGAATGATACGCGTCGTTCAACAGTCATTATTAGGTTCAATTTTGTCTAACATGTTATTAGTACTTGGATGTGCCTTCTTTGCTGGTGGAATTGTGGTTTCTAAGAGGGAGCAGGTCTTCAGTAAGGCATCTGCTACTGTAAACTCTGGATTGCTGTTAATGGCGGTAATGGGACTTCTATTTCCTGCTGTTCTTCGTTCCACACATACAGAGTTGCACTCTGGGAAGTCAGAGTTGGCTCTTTCAAGATTTAGTAGCGGCATTATGTTGGTGGCATATGCTGCCTATCTTGTTTTTCAGTTGAAAAGCGATAAGAACTTATATCTCCCCGTTACTGAGGAGGATACTGAAGAGAGTTTGGATGATGAAGACGCCCCCGAGATTTCTATGTGGGAATCCATTATTTGGCTGTTTATCTTGACCATTTGGATCTCCGTCCTCTCAGAATACTTGGTTAATGCAATAGAGGGGGCGTCGGTTGCCATGAACATACCGGTGGCGTTCATTAGCGTTATCCTACTACCCATCGTTGGGAATGCGGCAGAGCATGCAGGTGCCATCATGTTTGCCATGAAAGACAAGCTTGACATTTCTTTGGGAGTCGCAATAGGATCATCCACACAGATATCGATGTTCGGGACCGCCACGCTTTTCATCACGGTCATTGTTGTGGCCTTCATGTTGCAGGATGGAACTTCCAATTACCTCAAAGGACTGATGCTTATTCTCTGCTACCTGATAGTAGCTGCGAGTTTCTTTGTACATGTTGATCCAGCGTCAGTTGAAGACAAGACCCGAAAACATCGTCTATGA 1365 43.66 MGRFCLLCIGMDSDLNKTTYCGNNFVALSNDNKQNIDRHSRAEMGSFGERTILEFEDESLVSPVSLNRKNFSIEHSSSLGGGSQKLCYGNMKNRVFHSLKVVVFSAKINFLMPFGPLAILVSSLTGHHGWVFLLSLLGIIPLAERLGYATEQLACYTGATVGGLLNATFGNATELIISIYALRRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGIVVSKREQVFSKASATVNSGLLLMAVMGLLFPAVLRSTHTELHSGKSELALSRFSSGIMLVAYAAYLVFQLKSDKNLYLPVTEEDTEESLDDEDAPEISMWESIIWLFILTIWISVLSEYLVNAIEGASVAMNIPVAFISVILLPIVGNAAEHAGAIMFAMKDKLDISLGVAIGSSTQISMFGTATLFITVIVVAFMLQDGTSNYLKGLMLILCYLIVAASFFVHVDPASVEDKTRKHRL 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5336225 5342866 + Cp4.1LG16g03660.1 Cpe16g00366 482741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00366 454 Gene3D - 158 296 IPR044880 -
Cpe16g00366 454 Gene3D - 303 438 IPR044880 -
Cpe16g00366 454 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 395 448 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cpe16g00366 454 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 36 398 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cpe16g00366 454 Pfam Sodium/calcium exchanger protein 318 435 IPR004837 GO:0016021|GO:0055085
Cpe16g00366 454 Pfam Sodium/calcium exchanger protein 130 285 IPR004837 GO:0016021|GO:0055085
Cpe16g00366 454 PANTHER VACUOLAR CATION/PROTON EXCHANGER 395 448 - -
Cpe16g00366 454 PANTHER VACUOLAR CATION/PROTON EXCHANGER 36 398 - -
Cpe16g00366 454 TIGRFAM cax: calcium/proton exchanger 112 399 IPR004798 GO:0006816|GO:0015369
Cpe16g00366 454 TIGRFAM caca2: calcium/proton exchanger 95 396 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00661 Cpe-Chr6:4110527 Cpe16g00366 Cpe-Chr16:5336225 1.63E-06 dispersed
Cpe08g01222 Cpe-Chr8:8906933 Cpe16g00366 Cpe-Chr16:5336225 2.07E-95 dispersed
Cpe16g00366 Cpe-Chr16:5336225 Cpe19g00283 Cpe-Chr19:2455207 2.48E-84 dispersed
Cpe08g00825 Cpe-Chr8:6579625 Cpe16g00366 Cpe-Chr16:5336225 2.75E-101 transposed
Cpe16g00366 Cpe-Chr16:5336225 Cpe05g01322 Cpe-Chr5:9283872 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00366 K07300 - csv:101215915 731.095