Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00379 ATGGCGGAATCGGATAACGAATCGGGAGGGCACAACAGCAACGCGAACAGCGAGTTGTCTGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGTTACCAGCAAACGCGAAGATCTCAAAAGATGCAAAAGAAACGGTACAAGAGTGCGTGTCGGAGTTTATAAGCTTCATAACAGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAGAGGAAGACAATCAACGGCGACGATTTGCTGTGGGCCATGACGACGCTAGGATTCGAAGAGTATGTGGAACCGCTCAAGACTTATCTGCAAAAGTACAGAGAATTGGAAGGGGAAAAGAGCACTATGGGGAGACAGGGGGAGAAAGACGGTAGTGGTGGTGGTGGTGGGCCCAGCGGCAGTGGTGCTAGTGGTGGAGTCAACTCTAGTACTGGTGGTGGTGGTGTTGGCGGCGGTGGATTTAACGGAGTGGGTGGAATGTATGGTGGGATGATGATGATGGGGCATCATCAGGGAGGCGTTTATGGCAGTGGTGGTGGATATCATCACATGGGAATCGGCGGAGGGAAGGAAGGAAATAGTGGTTCCGGGTAG 606 52.48 MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTMGRQGEKDGSGGGGGPSGSGASGGVNSSTGGGGVGGGGFNGVGGMYGGMMMMGHHQGGVYGSGGGYHHMGIGGGKEGNSGSG 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5421766 5422371 - Cp4.1LG16g03860.1 Cpe16g00379 482754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00379 201 MobiDBLite consensus disorder prediction 1 24 - -
Cpe16g00379 201 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 1 180 - -
Cpe16g00379 201 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Cpe16g00379 201 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cpe16g00379 201 Gene3D Histone, subunit A 14 132 IPR009072 GO:0046982
Cpe16g00379 201 MobiDBLite consensus disorder prediction 1 21 - -
Cpe16g00379 201 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 180 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cpe16g00379 201 SUPERFAMILY Histone-fold 24 128 IPR009072 GO:0046982
Cpe16g00379 201 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Cpe16g00379 201 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Cpe16g00379 201 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Cpe16g00379 201 MobiDBLite consensus disorder prediction 115 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00718 Cpe-Chr1:4179469 Cpe16g00379 Cpe-Chr16:5421766 3.47E-62 dispersed
Cpe08g00829 Cpe-Chr8:6614923 Cpe16g00379 Cpe-Chr16:5421766 1.65E-63 dispersed
Cpe08g01124 Cpe-Chr8:8440769 Cpe16g00379 Cpe-Chr16:5421766 1.58E-60 dispersed
Cpe12g00955 Cpe-Chr12:8091978 Cpe16g00379 Cpe-Chr16:5421766 2.04E-51 dispersed
Cpe14g00570 Cpe-Chr14:3617342 Cpe16g00379 Cpe-Chr16:5421766 3.07E-63 dispersed
Cpe14g00788 Cpe-Chr14:6208777 Cpe16g00379 Cpe-Chr16:5421766 2.97E-45 dispersed
Cpe05g00405 Cpe-Chr5:2291685 Cpe16g00379 Cpe-Chr16:5421766 2.30E-09 transposed
Cpe16g00379 Cpe-Chr16:5421766 Cpe05g01389 Cpe-Chr5:9768058 1.01E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50703 PF00808 CBFD_NFYB_HMF 1.90E-27 CL0012 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00379 K08065 - csv:101219076 238.424