Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00390 ATGTGGAGGGGTTGCTCTGGCGGAGCTGGGGTTTTGCTCAAGCTCTCAAGGTGCTTGCTGAGGATGTCTGTGAGCTGCAAGTTTTCTACCTCCAATGGAAAATTTCCAGCTGGGTTTAAGCTGAAGAAGGCGAAGGAGTATCTGTGTTTGTTAAATTCCACCGGAAAATGGAAGAAGAGGCTTCTCTGTCTTTGGATTCTCGCTCTACTTATACTTTTGAGCCGTTGGTTTTCCTTGCGTTCGTATAATGTAAATAGTGGCACAAAACAGAAGACCTCGTACTTGTTCGACGAAGAAACTCGAACTTTTCTGCGGCATTTCAATGTAAGCAAGAATCAGCTTCAAGCTTTAGCTTCCTTGTTATCCGAATCAGATCGGATATCGGGGTGCACCAATGATTTTGGACCTGACACATCAGAGTTGGATGGAATTGGCTGTGCTCAGAGGTTACTGTACTGGGAGCAAGATTTGCACAAGCAGTATGTATGGGTTGAAGAAAGTGCAGATTCCAATGTTGGGCGGTGCCCAGTTCGAACTGAGAAGATCCCTGAAAATTCTGACCAATTATTCTCTGAGGACATAACTGTTCCATTTGCTACAGACTTATCCATCTCTTTACTTTCAAATGGAAATCAGCTTTGTGGAAAGATAATTGAACAAGCAGGACAGCTAAGATGCCTTATAAGAAAGCACTGGAAGATTTTCTGTAGTTTATTGATTGGATGTTTTTGGGTTCTTCTTGGACTGGTAGTGTTCCAGAAAGTATCTGGTTTCCAGCTAAAATTGTGGAACAAGAAACATCCAAAGCCAAATCAGCCATTGGTTCATCAACAGTGGGTCTTACTAAGGAGAAAACAGCATCAAGTCAAAGATTCTCCTAAAAGCGCTGGTAAATGGCGGAAGGTGCTCTTAAGAATATTTATCGTAGTTGGGATCGTCGGGTCCATTTGGTTATTTTGGTACCTGAACCAGACAGCCATTTTGAGAAGAGAAGAAACACTTGCAAACATGTGTGATGAGCGAGCCCGGATGTTGCAGGACCAATTTAACGTTAGCATGAACCATGTTCATGCATTGGCTGTTCTTACCTCTACTTTCCACCATGGAAAACAGCCTTCTGCCATTGATCAGAAAACATTTGGTGAATATACAGAAAGAACCGCCTTTGAAAGACCGCTGACTAGCGGTGTAGCTTATGCTCTGAAAGTTAATCACTCAGAAAGAGAGAAATTTGAGATGATGCATGGATGGACGATAAAGAAAATGGAGACTGAGGACCAAACTCTTGTTCAAGATTGTGATCCAGAAAATTTGGACCCTGCACCCATTCAAGATGAATATGCACCTGTCATATTTTCTCAAGAAACAGTCGCGCATATAGTTTCTATCGACATGATGTCGGGAAAAGAGGACCGTGAGAACATCTTGCGAGCTAGGGCGTCTGGGAAGGGAGTGCTTACATCTCCTTTTAAACTTTTGAAATCTAATCACCTTGGAGTTGTTCTCACATTTGCTGTCTATAACACTGACCTCCCACCAGACGCTACTCCCGAGCAACGTATTGAAGCTACTGTTGGTTATCTAGGTGCATCATATGATATCCCCTCACTGGTGGAAAAGCTTCTGCATCAGCTTGCTAGCAAGCAGACAATTGTTGTGAATGTTTATGATACAACCAATGATTCTGCTCCGATCAACATGTACGGTTCTGATTTTACCGATACCGGGCTACTGCATATTAGTAAACTTGATTTTGGGGATCCATTAAGAAGGCATGAGATGCATTGTAGATTCAAGCATAAACCTCCACCTCCTTGGACGGCTATCAATTCATCAGCTGGCGTCCTAATCATTACCTTGTTGGTTGGCCATATATTTCATGCAGCAATAAGTCGGATTGCAAAAGTGGAGAATGACTATCACGAGATGATGGGGCTTAAAAGTCGCGCCGAAGCTGCTGATGTGGCAAAATCACAGTTTCTGGCAACAGTTTCCCATGAGATCAGAACACCAATGAATGGTGTTTTAGGCATGCTCAAATTACTGATGTACACTAACCTTGATTCAAAGCAACTGGATTTTGCCCAGACTGCCCACGAGAGTGGAAAAGATCTGATATCACTCATAAATAAGGTTCTTGATCAAGCTAAGATGGAATCAGGAAGGCTTGAACTTGAATCTGTGCCCTTCGATCTGCGTGCTATACTTGATAATGTGATCTCACCTTTTTCTCTCAAATCTAATGACAAGGGAATTGAGTTGGCTGTTTATGTCTCTGATTTGGTGCCTGAAGTTGTCATTGGTGACCCTGGACGCTTTCGTCAAATAATTACTCATCTTGTTGGAAATTCACTCAAGTTTACTCATAAAAGGGGACACATATTAGTCTCGGTGCATCTGGCTGACGAGGTGAGAGGTCCAGTTGATTTTATGGACATTGTTCTTAAACAAGGCACATATGTAGTTGGAGATACATCAAACAATAGTTGTACTACATTCAGTGGGTTACCTGTGGTGGATAGATGGAAAAGCTGGGAGAAATTCAAAAAGTTCAGCAGGACGGATGCGGTGGAGGAACCCAAAACAATTAGAATACTCGTGACCGTAGAGGATACAGGTGTAGGAATTCCCCACGATGCACAAAACCGAGTATTCATGCCTTTTATGCAGGCAGATAGTTCCACATCTCGGACGTATGGTGGCACGGGAATAGGATTGAGTATTAGCAAACATTTGGTGGATCTCATGGATGGGGAGATTGGGTTTGTGAGTGAACCTGGTATTGGTAGCACATTTTCTTTTACGGTTTCTTTCCAGAAAGGGGAAATTAGTTCTTTGGATACCAGACAGCCGCACTGTGATCTGGGTGTTGTCGATTTCCAGGGGCTAAGAGCGTTAATAATTGATAATAGCTGCGTTCGAGCAGAGGTCACGAGATATCATCTTCAGAGGCTGGGGATCTCTGTTGATATTACTCTGAGTGCAGAGTCTGCTTATCAATATCTATCCAATGCCTCCAACACAAGAGCATCAACACAACTGGCCATGATTCTTATAGACAAAGACATTTGGGACAAGAAAGAGGGTCTCAAGTTCCATCTTTTGTTTAAAGAGCATGTGAATGGTCCAAAACTCTTTCTCTTGGCATCCCCCAAAAGCTCCAATGAGCAATATGAACTTAGATCTTCTGGCCATGTAAATAATGTGTTAAGTAAACCTCTTCAGTTAAACGTGTTGGTCAGTTGCTTCCGTGAAGTCTTCGGGATCGAGAAGAGGAATCAAGTAATTATTAAACGACCATCGACTCTTGGAAATCTGCTGAAAGAAAAGCATATCCTGGTTGTGGATGACAATGCTGTAAACAGAAAGGTGGCCGAAGGCGCCCTAAAGAAATATGGAGCTGTTGTAACTTGTGTAGAACGTGGAACGGATGCTGTGGCTCTCCTCAACCCTCCACACAACTTTGATGCTTGCTTCATGGACCTCCAGATGCCTGAGATGGATGGGTATGAAGCTACAAGACGGGTCCGTGCTGTAGAAAGTGGCGTGAACGCGAAAATTTCATCTGGGGAAGTGTCAAATGAGGATAATAAGGTCCATTGGCACACACCAATATTTGCTATGACGGCAGATTTAATTCAGGCTATGAATGAAGAGTGCGTGAAGTGTGGGATGGATGGTTATGTAGCTAAGCCATTCGAAGAGGAGCAGCTTTATTCGACTGTAGCACGTTTTCTTGAAACTGCTTGA 3750 43.07 MWRGCSGGAGVLLKLSRCLLRMSVSCKFSTSNGKFPAGFKLKKAKEYLCLLNSTGKWKKRLLCLWILALLILLSRWFSLRSYNVNSGTKQKTSYLFDEETRTFLRHFNVSKNQLQALASLLSESDRISGCTNDFGPDTSELDGIGCAQRLLYWEQDLHKQYVWVEESADSNVGRCPVRTEKIPENSDQLFSEDITVPFATDLSISLLSNGNQLCGKIIEQAGQLRCLIRKHWKIFCSLLIGCFWVLLGLVVFQKVSGFQLKLWNKKHPKPNQPLVHQQWVLLRRKQHQVKDSPKSAGKWRKVLLRIFIVVGIVGSIWLFWYLNQTAILRREETLANMCDERARMLQDQFNVSMNHVHALAVLTSTFHHGKQPSAIDQKTFGEYTERTAFERPLTSGVAYALKVNHSEREKFEMMHGWTIKKMETEDQTLVQDCDPENLDPAPIQDEYAPVIFSQETVAHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTDLPPDATPEQRIEATVGYLGASYDIPSLVEKLLHQLASKQTIVVNVYDTTNDSAPINMYGSDFTDTGLLHISKLDFGDPLRRHEMHCRFKHKPPPPWTAINSSAGVLIITLLVGHIFHAAISRIAKVENDYHEMMGLKSRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKLLMYTNLDSKQLDFAQTAHESGKDLISLINKVLDQAKMESGRLELESVPFDLRAILDNVISPFSLKSNDKGIELAVYVSDLVPEVVIGDPGRFRQIITHLVGNSLKFTHKRGHILVSVHLADEVRGPVDFMDIVLKQGTYVVGDTSNNSCTTFSGLPVVDRWKSWEKFKKFSRTDAVEEPKTIRILVTVEDTGVGIPHDAQNRVFMPFMQADSSTSRTYGGTGIGLSISKHLVDLMDGEIGFVSEPGIGSTFSFTVSFQKGEISSLDTRQPHCDLGVVDFQGLRALIIDNSCVRAEVTRYHLQRLGISVDITLSAESAYQYLSNASNTRASTQLAMILIDKDIWDKKEGLKFHLLFKEHVNGPKLFLLASPKSSNEQYELRSSGHVNNVLSKPLQLNVLVSCFREVFGIEKRNQVIIKRPSTLGNLLKEKHILVVDDNAVNRKVAEGALKKYGAVVTCVERGTDAVALLNPPHNFDACFMDLQMPEMDGYEATRRVRAVESGVNAKISSGEVSNEDNKVHWHTPIFAMTADLIQAMNEECVKCGMDGYVAKPFEEEQLYSTVARFLETA 1249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5476764 5486666 + Cp4.1LG16g03780.1 Cpe16g00390 482765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00390 1249 SMART CHASE_2 371 570 IPR006189 -
Cpe16g00390 1249 Gene3D - 625 719 - -
Cpe16g00390 1249 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 710 936 IPR036890 -
Cpe16g00390 1249 PANTHER HISTIDINE KINASE 2 285 1247 - -
Cpe16g00390 1249 PANTHER TWO-COMPONENT HISTIDINE KINASE 285 1247 - -
Cpe16g00390 1249 Gene3D - 720 942 IPR036890 -
Cpe16g00390 1249 Pfam His Kinase A (phospho-acceptor) domain 656 721 IPR003661 GO:0000155|GO:0007165
Cpe16g00390 1249 CDD HATPase_EvgS-ArcB-TorS-like 773 936 - -
Cpe16g00390 1249 SMART HKATPase_4 768 940 IPR003594 -
Cpe16g00390 1249 Gene3D - 1105 1249 - -
Cpe16g00390 1249 Gene3D - 322 374 - -
Cpe16g00390 1249 Gene3D - 85 125 - -
Cpe16g00390 1249 CDD HisKA 656 717 IPR003661 GO:0000155|GO:0007165
Cpe16g00390 1249 ProSiteProfiles Response regulatory domain profile. 1111 1246 IPR001789 GO:0000160
Cpe16g00390 1249 SMART REC_2 1110 1242 IPR001789 GO:0000160
Cpe16g00390 1249 Gene3D - 959 1097 - -
Cpe16g00390 1249 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 642 722 IPR036097 GO:0000155|GO:0007165
Cpe16g00390 1249 SUPERFAMILY CheY-like 959 1088 IPR011006 -
Cpe16g00390 1249 ProSiteProfiles CHASE domain profile. 371 595 IPR006189 -
Cpe16g00390 1249 PRINTS Bacterial sensor protein C-terminal signature 865 879 IPR004358 GO:0016310|GO:0016772
Cpe16g00390 1249 PRINTS Bacterial sensor protein C-terminal signature 883 893 IPR004358 GO:0016310|GO:0016772
Cpe16g00390 1249 PRINTS Bacterial sensor protein C-terminal signature 900 918 IPR004358 GO:0016310|GO:0016772
Cpe16g00390 1249 PRINTS Bacterial sensor protein C-terminal signature 924 937 IPR004358 GO:0016310|GO:0016772
Cpe16g00390 1249 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 768 938 IPR003594 -
Cpe16g00390 1249 SUPERFAMILY CheY-like 1108 1247 IPR011006 -
Cpe16g00390 1249 ProSiteProfiles Histidine kinase domain profile. 663 940 IPR005467 -
Cpe16g00390 1249 ProSiteProfiles Response regulatory domain profile. 964 1087 IPR001789 GO:0000160
Cpe16g00390 1249 Gene3D CHASE domain 375 602 IPR042240 -
Cpe16g00390 1249 Pfam CHASE domain 374 568 IPR006189 -
Cpe16g00390 1249 Pfam Response regulator receiver domain 1112 1242 IPR001789 GO:0000160
Cpe16g00390 1249 CDD REC_hyHK_CKI1_RcsC-like 1112 1242 - -
Cpe16g00390 1249 SMART HisKA_10 656 721 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00966 Cpe-Chr1:5727882 Cpe16g00390 Cpe-Chr16:5476764 0 dispersed
Cpe01g01858 Cpe-Chr1:15849312 Cpe16g00390 Cpe-Chr16:5476764 0 dispersed
Cpe08g01314 Cpe-Chr8:9453335 Cpe16g00390 Cpe-Chr16:5476764 6.21E-15 dispersed
Cpe13g00429 Cpe-Chr13:4620451 Cpe16g00390 Cpe-Chr16:5476764 0 dispersed
Cpe14g01030 Cpe-Chr14:8659658 Cpe16g00390 Cpe-Chr16:5476764 7.57E-15 dispersed
Cpe16g00390 Cpe-Chr16:5476764 Cpe17g01074 Cpe-Chr17:8161488 7.13E-113 dispersed
Cpe16g00390 Cpe-Chr16:5476764 Cpe04g00676 Cpe-Chr4:6801950 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50705 PF03924 CHASE 5.70E-35 CL0165 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00390 K14489 - csv:101221294 2173.67