Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00391 ATGCAAGCTTCTCAGCTTCATAGAGATTCACATATGTCGAAGAGGCTATGTTATCAGCCAATTCAAGGAGCGGATACCTACTGTTTCTCCCAATTATGTTCTAGTGCTGGCAACCAAAGAGCTCAGCTCAATGTCGATGACATCGGTGATCGGTACTGCACTCTGGAGTCGTCCTCTGGTAGCCAAGGCTATGCAGCTCACAACTCAACGTCGAATGTCACTTTCTCATCCAATGGGAGCACAATATCGCAACAGGATTCTCGTTCGAATCCCTCTGATCAGCATAATTCCATTGACTATGCATATGGCTCCCCTGTAAGCGGATCCAGCATAACAGATGATCTTAGTGATTTTAGGCACAAATTAAGGGAACTGGAAAGTGTAATGCTTGGCCCTGATTCTGATGTTATTGATAGTTTTGATAGTATCTTCCAGGAGGGAACTGAGAATCCAGAGATGGGAACTTGGGGGCAAGTGATGGATGTTATCACCAAAGGAAGCTTAAAAAAGATTCTAATAGCTTGTGCTAAAGCTGTATCAGATAACGATGTGTTGATGGCGCAATGGCTGATGGATGAATTGCGTAAGATGGTTTCGGTTTGCGGTGAACCGATGCAGCGATTGGGAGCGTATATGCTTGAGGGGCTGGTTGCACGGTTAGCCTCCTCAGGTAGTTGCATCTATAAATCTTTGAGATGCAAGGAACCAGCACGAGCCGAGCTTCTCTCGTATATGCACATTCTTTACGAGGTTTGCCCGTACTTTAAATTCGGATACATGTCAGCCAATGGTGCCATTGCAGAAGCTATGAAAGATGAAGATAGAGTTCACATCATTGATTTCCAAATTTCTCAGGGTACTCAATGGATCACTTTGATTCAAGCTTTTGCAAGCAGGCCTGGTCGACCGCCTCACATTCGTATAACCGGTATAGATGATCCTGCATCGGCTTATGCTCGTGGAGGCGGGCTAGACATCGTTGGTAGGAGGCTTTCCAAGTTAGCAAAATTGTATAATGTGCCATTTGAGTTTCACTCCGCTGCCATTTCTGGCTGTGATGTTCAGCAAAAAAACTTAAGCATTCGACGAGGGGAGGCTTTAGCAGTGAATTTCGCGTTCATGCTACACCATATGCCAGACGAGAGCGTAAGCACCGAAAATCACCGAGATAGACTATTGAGGCTGGTTAAGGGTCTGTCCCCAAAGGTAGTGACAGTCGTCGAACAAGAATCCAACACGAACACCGCTGCATTCTATCCCCGGTTCATCGAAACGCTGGATTACTACAACGCCATGTTTGAATCAATCGACGTTACTCTTCCAAGACAACACAAGGAGCGAATTAACATCGAGCAGCATTGTCTAGCAAGGGAAGTTGTGAACATACTAGCATGCGAAGGGGCCGAAAGAGTGGAACGACACGAGCTACTCGGAAAATGGAGACTCCGATTCGCAATGGCAGGATTTACAGCTTACCCATTAAGCTCTTTGGTTAATGCTACCATAAAAACGTTATTAGATAACTATTCTAACAGGTATAGGATTGAAGAGAGAGAAGGGGCTCTGTATCTAGGCTGGATGGATAGGGATTTGGTCGCTTCCTGTGCATGGAAGTGA 1617 45.52 MQASQLHRDSHMSKRLCYQPIQGADTYCFSQLCSSAGNQRAQLNVDDIGDRYCTLESSSGSQGYAAHNSTSNVTFSSNGSTISQQDSRSNPSDQHNSIDYAYGSPVSGSSITDDLSDFRHKLRELESVMLGPDSDVIDSFDSIFQEGTENPEMGTWGQVMDVITKGSLKKILIACAKAVSDNDVLMAQWLMDELRKMVSVCGEPMQRLGAYMLEGLVARLASSGSCIYKSLRCKEPARAELLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQISQGTQWITLIQAFASRPGRPPHIRITGIDDPASAYARGGGLDIVGRRLSKLAKLYNVPFEFHSAAISGCDVQQKNLSIRRGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTVVEQESNTNTAAFYPRFIETLDYYNAMFESIDVTLPRQHKERINIEQHCLAREVVNILACEGAERVERHELLGKWRLRFAMAGFTAYPLSSLVNATIKTLLDNYSNRYRIEEREGALYLGWMDRDLVASCAWK 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5492187 5493803 + Cp4.1LG16g03790.1 Cpe16g00391 482766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00391 538 ProSiteProfiles GRAS family profile. 159 538 IPR005202 -
Cpe16g00391 538 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 29 538 IPR005202 -
Cpe16g00391 538 Pfam GRAS domain family 168 538 IPR005202 -
Cpe16g00391 538 MobiDBLite consensus disorder prediction 75 97 - -
Cpe16g00391 538 PANTHER SCARECROW-LIKE TRANSCRIPTION FACTOR PAT1 29 538 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g01400 Cpe16g00391 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00113 Cpe-Chr3:570245 Cpe16g00391 Cpe-Chr16:5492187 1.22E-69 dispersed
Cpe08g01167 Cpe-Chr8:8658812 Cpe16g00391 Cpe-Chr16:5492187 1.99E-72 dispersed
Cpe10g00605 Cpe-Chr10:3534018 Cpe16g00391 Cpe-Chr16:5492187 4.77E-63 dispersed
Cpe16g00391 Cpe-Chr16:5492187 Cpe01g02589 Cpe-Chr1:21009953 2.91E-87 dispersed
Cpe18g00461 Cpe-Chr18:5581445 Cpe16g00391 Cpe-Chr16:5492187 1.82E-66 dispersed
Cpe20g00829 Cpe-Chr20:7491328 Cpe16g00391 Cpe-Chr16:5492187 5.66E-49 dispersed
Cpe02g00742 Cpe-Chr2:4722576 Cpe16g00391 Cpe-Chr16:5492187 1.03E-174 transposed
Cpe02g00884 Cpe-Chr2:6289824 Cpe16g00391 Cpe-Chr16:5492187 1.88E-156 transposed
Cpe06g00888 Cpe-Chr6:5925360 Cpe16g00391 Cpe-Chr16:5492187 1.19E-150 transposed
Cpe08g00851 Cpe-Chr8:6729502 Cpe16g00391 Cpe-Chr16:5492187 0 transposed
Cpe14g00768 Cpe-Chr14:6042419 Cpe16g00391 Cpe-Chr16:5492187 0 transposed
Cpe10g00749 Cpe-Chr10:4266154 Cpe16g00391 Cpe-Chr16:5492187 0 wgd
Cpe16g00391 Cpe-Chr16:5492187 Cpe05g01400 Cpe-Chr5:9850883 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50706 PF03514 GRAS 1.10E-135 CL0063 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00391 - - csv:101221914 973.77