Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00392 ATGCCAAGTCCAGTGGACTGCAACTGTAATTTTCTATCTTATTTGCTCAATTTACTTATATTTTGGAACTCATTACAGATGCCAGATGAAAATTCAATTCCATTTGATCGAGATGCAGAGCCTTTTGTTGAGGTCGATCCAACTGGAAGGTTTGGACGATACAATGATCTTCTTGGGTCTGGAGCAGTGAAGAAAGTTTATAGAGCATTTGATCAGGAGGAAGGAATTGAGGTTGCTTGGAATCAGGTTCGATTGAGAAATTTTAGTGGGGATCCAATGTTCATTAACCGCTTGAGATCTGAGGTTCAGCTGCTGAGCACGTTAAACAACAAGTATATAATTGTTTGTTACAGTGTTTGGAATGATGATGAGCATAATACGTTGAATTTCATTACCGAGGTGTGCACATCAGGAAATCTGAGGGAATATCGTAAGAAACATCGACATGTGTCAATTAAGGCCTTGAAGAAGTGGTCAAAACAGGTACTCGAGGGATTGGATTATCTTCATACTCACGAACCTTGCATTATTCACAGGGACCTCAACTGCAGTAACATATTTGTCAATGGTAACATTGGGCAGGTGCAATGTCAACTTTCCTTCCGTGGAGATTATAAGAAATGCCGATGA 630 39.84 MPSPVDCNCNFLSYLLNLLIFWNSLQMPDENSIPFDRDAEPFVEVDPTGRFGRYNDLLGSGAVKKVYRAFDQEEGIEVAWNQVRLRNFSGDPMFINRLRSEVQLLSTLNNKYIIVCYSVWNDDEHNTLNFITEVCTSGNLREYRKKHRHVSIKALKKWSKQVLEGLDYLHTHEPCIIHRDLNCSNIFVNGNIGQVQCQLSFRGDYKKCR 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5495339 5496157 + Cp4.1LG16g03830.1 Cpe16g00392 482767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00392 209 Gene3D Transferase(Phosphotransferase) domain 1 135 200 - -
Cpe16g00392 209 SMART serkin_6 52 209 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe16g00392 209 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 27 196 - -
Cpe16g00392 209 SUPERFAMILY Protein kinase-like (PK-like) 45 195 IPR011009 -
Cpe16g00392 209 Gene3D Phosphorylase Kinase; domain 1 36 133 - -
Cpe16g00392 209 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK11-RELATED 27 196 - -
Cpe16g00392 209 Pfam Protein kinase domain 56 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe16g00392 209 ProSiteProfiles Protein kinase domain profile. 52 209 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00678 Cpe16g00392 CCT
Cpe04g00678 Cpe16g00392 ECH
Cpe05g01401 Cpe16g00392 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00766 Cpe-Chr14:6028325 Cpe16g00392 Cpe-Chr16:5495339 2.61E-91 dispersed
Cpe16g00392 Cpe-Chr16:5495339 Cpe09g01001 Cpe-Chr9:8877785 4.56E-67 dispersed
Cpe16g00392 Cpe-Chr16:5495339 Cpe05g01401 Cpe-Chr5:9854058 7.97E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62890 PF00069 Pkinase 1.20E-24 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00392 K08867 - csv:101222153 347.051