Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe16g00399 | ATGTTGGCTTATGGGAACAAGTGGCCAATATTAACATTTATAATTGCTGCTGCAACTGTCAATGCGCAAGGTTTGAATTGTGCGAGGATCTTTTATGTTATTGGTATCACAATTGCTGATATTTGCACTTCTATGTATGACGAAACAGCAAACATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGCGAGCTTGTGTTCAAGGAAGATGGTCAGGAGTATGCACAAGTTCTCAGAATGTTGGGGAACGGTCGGTGTGAGGCAATGTGCATCGACGGGTCGAAGCGTCTTTGCCATATCCGAGGGAAGATGCACAAGAAGGTCTGGATTGCAGCTGGTGATATAATACTCGTTGGTCTTCGCGACTATCAGGATGATAAAGCTGATGTTATCCTCAAGTACATGCCTGATGAAGCAAGGCTGTTGAAGGCATATGGAGAGCTTCCTGAGAACACCCGCCTCAACGAGGGTATCGCTGGCGGAATCGACGACGAGGATGATGGTGGGGTTGATGATTATCTGGAGTTTGAGGATGAAGATATTGATAAGATTTAG | 591 | 45.35 | MLAYGNKWPILTFIIAAATVNAQGLNCARIFYVIGITIADICTSMYDETANMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIAGGIDDEDDGGVDDYLEFEDEDIDKI | 196 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 5528162 | 5529502 | - | Cp4.1LG16g04160.1 | Cpe16g00399 | 482774 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe16g00399 | 196 | ProSitePatterns | Eukaryotic initiation factor 1A signature. | 92 | 114 | IPR018104 | GO:0003743|GO:0006413 | |
Cpe16g00399 | 196 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKE | 52 | 196 | - | - | |
Cpe16g00399 | 196 | Gene3D | - | 53 | 196 | IPR012340 | - | |
Cpe16g00399 | 196 | Hamap | Translation initiation factor 1A [eif1a]. | 67 | 161 | IPR001253 | GO:0003743|GO:0006413 | |
Cpe16g00399 | 196 | SUPERFAMILY | Nucleic acid-binding proteins | 53 | 195 | IPR012340 | - | |
Cpe16g00399 | 196 | ProSiteProfiles | S1 domain IF1 type profile. | 73 | 147 | IPR006196 | GO:0003723|GO:0003743|GO:0006413 | |
Cpe16g00399 | 196 | CDD | S1_IF1A | 84 | 160 | IPR001253 | GO:0003743|GO:0006413 | |
Cpe16g00399 | 196 | SMART | eIF1neu4 | 79 | 161 | IPR001253 | GO:0003743|GO:0006413 | |
Cpe16g00399 | 196 | TIGRFAM | eIF-1A: translation initiation factor eIF-1A | 65 | 161 | IPR001253 | GO:0003743|GO:0006413 | |
Cpe16g00399 | 196 | PANTHER | EIF-1A | 52 | 196 | IPR001253 | GO:0003743|GO:0006413 | |
Cpe16g00399 | 196 | MobiDBLite | consensus disorder prediction | 53 | 75 | - | - | |
Cpe16g00399 | 196 | Pfam | Translation initiation factor 1A / IF-1 | 83 | 144 | IPR006196 | GO:0003723|GO:0003743|GO:0006413 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g01240 | Cpe-Chr3:10063914 | Cpe16g00399 | Cpe-Chr16:5528162 | 5.41E-101 | dispersed | |
Cpe08g00083 | Cpe-Chr8:530343 | Cpe16g00399 | Cpe-Chr16:5528162 | 1.92E-102 | dispersed | |
Cpe15g00715 | Cpe-Chr15:7576707 | Cpe16g00399 | Cpe-Chr16:5528162 | 1.22E-22 | wgd | |
Cpe16g00399 | Cpe-Chr16:5528162 | Cpe04g00700 | Cpe-Chr4:6933419 | 1.37E-88 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe16g00399 | K03236 | - | ini:109155805 | 264.233 |