Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00399 ATGTTGGCTTATGGGAACAAGTGGCCAATATTAACATTTATAATTGCTGCTGCAACTGTCAATGCGCAAGGTTTGAATTGTGCGAGGATCTTTTATGTTATTGGTATCACAATTGCTGATATTTGCACTTCTATGTATGACGAAACAGCAAACATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGCGAGCTTGTGTTCAAGGAAGATGGTCAGGAGTATGCACAAGTTCTCAGAATGTTGGGGAACGGTCGGTGTGAGGCAATGTGCATCGACGGGTCGAAGCGTCTTTGCCATATCCGAGGGAAGATGCACAAGAAGGTCTGGATTGCAGCTGGTGATATAATACTCGTTGGTCTTCGCGACTATCAGGATGATAAAGCTGATGTTATCCTCAAGTACATGCCTGATGAAGCAAGGCTGTTGAAGGCATATGGAGAGCTTCCTGAGAACACCCGCCTCAACGAGGGTATCGCTGGCGGAATCGACGACGAGGATGATGGTGGGGTTGATGATTATCTGGAGTTTGAGGATGAAGATATTGATAAGATTTAG 591 45.35 MLAYGNKWPILTFIIAAATVNAQGLNCARIFYVIGITIADICTSMYDETANMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIAGGIDDEDDGGVDDYLEFEDEDIDKI 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5528162 5529502 - Cp4.1LG16g04160.1 Cpe16g00399 482774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00399 196 ProSitePatterns Eukaryotic initiation factor 1A signature. 92 114 IPR018104 GO:0003743|GO:0006413
Cpe16g00399 196 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKE 52 196 - -
Cpe16g00399 196 Gene3D - 53 196 IPR012340 -
Cpe16g00399 196 Hamap Translation initiation factor 1A [eif1a]. 67 161 IPR001253 GO:0003743|GO:0006413
Cpe16g00399 196 SUPERFAMILY Nucleic acid-binding proteins 53 195 IPR012340 -
Cpe16g00399 196 ProSiteProfiles S1 domain IF1 type profile. 73 147 IPR006196 GO:0003723|GO:0003743|GO:0006413
Cpe16g00399 196 CDD S1_IF1A 84 160 IPR001253 GO:0003743|GO:0006413
Cpe16g00399 196 SMART eIF1neu4 79 161 IPR001253 GO:0003743|GO:0006413
Cpe16g00399 196 TIGRFAM eIF-1A: translation initiation factor eIF-1A 65 161 IPR001253 GO:0003743|GO:0006413
Cpe16g00399 196 PANTHER EIF-1A 52 196 IPR001253 GO:0003743|GO:0006413
Cpe16g00399 196 MobiDBLite consensus disorder prediction 53 75 - -
Cpe16g00399 196 Pfam Translation initiation factor 1A / IF-1 83 144 IPR006196 GO:0003723|GO:0003743|GO:0006413
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01240 Cpe-Chr3:10063914 Cpe16g00399 Cpe-Chr16:5528162 5.41E-101 dispersed
Cpe08g00083 Cpe-Chr8:530343 Cpe16g00399 Cpe-Chr16:5528162 1.92E-102 dispersed
Cpe15g00715 Cpe-Chr15:7576707 Cpe16g00399 Cpe-Chr16:5528162 1.22E-22 wgd
Cpe16g00399 Cpe-Chr16:5528162 Cpe04g00700 Cpe-Chr4:6933419 1.37E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00399 K03236 - ini:109155805 264.233