Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00408 ATGATTTCAAAAATGGCGGCCGATGGATCCAACCCTTCTCTTGGCAAGAAGAAAAGAAGCCTCCCCGGAACTCCAGATCCAGAAGCAGAGGTCATAGCCTTGTCGCCCAAGACACTGATGGCAACAAAGAGGTTCGTTTGTGAAATATGTGGAAAAGGGTTTCAAAGAGACCAAAACCTACAGCTGCATAGGCGAGGACATAACCTTCCATGGAAGCTGAAGCAACGAAGCAACAAAGAGGCAAAGAAGAGAGTGTATGTCTGCCCTGAAACAAGCTGCGTGCATCACCATCCATCGAGAGCGCTAGGAGACCTGACGGGGATAAAGAAGCACTTTTGTAGGAAGCATGGAGAGAAGAAGTGGAAGTGCGAGAAATGCTCAAAGAGTTACGCAGTGCAATCGGATTGGAAAGCACATTCCAAAACTTGTGGCACTAGAGAATACAAATGTGACTGTGGTACTCTGTTTTCAAGGAGAGATAGCTTCATCAGTCATAGGGCGTTTTGTGATGCATTGGCTGAAGAAGCTGCAAGAGTAAGCAATGCCATGGCGCAACATTGGGTGATGTACTGTGACCCTGTTTGCCAAAACCCAGCAGTGGGTGATTATTATAGTCGCCAATTACAGGAAGTGAATCAAACCCATATGGGGACTATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCTGAAATTGGGGCAATTTCAAGCTCCGGCCACTCGGTGATACTCGAAGAGGGGTTTGTGTTTAATAATGGGAGTGAGTTTTGTAATTCTGGTACTACAAACCCAATTGTTGTTATTGGGAATGAGAATGAAATGTACACTGCAAAACGGCGTTGTACTCAGAGTGAAGTAGAGTGTGGAGCAACAGGAGCAGCAGGGCTGACAAGGGATTTTCTTGGAGTTGGTGCCCAAACTATTTGCCACTCCTCACCAACAATCAAGGGATGGATTTAG 957 46.19 MISKMAADGSNPSLGKKKRSLPGTPDPEAEVIALSPKTLMATKRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSNKEAKKRVYVCPETSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKSYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFISHRAFCDALAEEAARVSNAMAQHWVMYCDPVCQNPAVGDYYSRQLQEVNQTHMGTMSATALLQKAAEIGAISSSGHSVILEEGFVFNNGSEFCNSGTTNPIVVIGNENEMYTAKRRCTQSEVECGATGAAGLTRDFLGVGAQTICHSSPTIKGWI 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5562431 5563738 - Cp4.1LG16g04120.1 Cpe16g00408 482783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00408 318 Gene3D Classic Zinc Finger 42 68 - -
Cpe16g00408 318 Gene3D Classic Zinc Finger 78 169 - -
Cpe16g00408 318 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Cpe16g00408 318 MobiDBLite consensus disorder prediction 1 28 - -
Cpe16g00408 318 SUPERFAMILY beta-beta-alpha zinc fingers 43 141 IPR036236 -
Cpe16g00408 318 PANTHER ZINC FINGER PROTEIN MAGPIE 214 310 - -
Cpe16g00408 318 PANTHER ZINC FINGER PROTEIN MAGPIE 12 187 - -
Cpe16g00408 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 67 IPR013087 -
Cpe16g00408 318 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 12 187 - -
Cpe16g00408 318 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 214 310 - -
Cpe16g00408 318 SMART c2h2final6 45 67 IPR013087 -
Cpe16g00408 318 SMART c2h2final6 121 141 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00706 Cpe16g00408 CCT
Cpe05g01416 Cpe16g00408 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00156 Cpe-Chr4:1515193 Cpe16g00408 Cpe-Chr16:5562431 1.01E-09 dispersed
Cpe16g00408 Cpe-Chr16:5562431 Cpe17g00872 Cpe-Chr17:6760175 1.69E-110 dispersed
Cpe16g00408 Cpe-Chr16:5562431 Cpe04g00706 Cpe-Chr4:7011986 2.58E-84 wgd
Cpe16g00408 Cpe-Chr16:5562431 Cpe05g01416 Cpe-Chr5:9928676 1.41E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50709 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00408 K25870 - cmax:111484111 627.091