Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe16g00408 | ATGATTTCAAAAATGGCGGCCGATGGATCCAACCCTTCTCTTGGCAAGAAGAAAAGAAGCCTCCCCGGAACTCCAGATCCAGAAGCAGAGGTCATAGCCTTGTCGCCCAAGACACTGATGGCAACAAAGAGGTTCGTTTGTGAAATATGTGGAAAAGGGTTTCAAAGAGACCAAAACCTACAGCTGCATAGGCGAGGACATAACCTTCCATGGAAGCTGAAGCAACGAAGCAACAAAGAGGCAAAGAAGAGAGTGTATGTCTGCCCTGAAACAAGCTGCGTGCATCACCATCCATCGAGAGCGCTAGGAGACCTGACGGGGATAAAGAAGCACTTTTGTAGGAAGCATGGAGAGAAGAAGTGGAAGTGCGAGAAATGCTCAAAGAGTTACGCAGTGCAATCGGATTGGAAAGCACATTCCAAAACTTGTGGCACTAGAGAATACAAATGTGACTGTGGTACTCTGTTTTCAAGGAGAGATAGCTTCATCAGTCATAGGGCGTTTTGTGATGCATTGGCTGAAGAAGCTGCAAGAGTAAGCAATGCCATGGCGCAACATTGGGTGATGTACTGTGACCCTGTTTGCCAAAACCCAGCAGTGGGTGATTATTATAGTCGCCAATTACAGGAAGTGAATCAAACCCATATGGGGACTATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCTGAAATTGGGGCAATTTCAAGCTCCGGCCACTCGGTGATACTCGAAGAGGGGTTTGTGTTTAATAATGGGAGTGAGTTTTGTAATTCTGGTACTACAAACCCAATTGTTGTTATTGGGAATGAGAATGAAATGTACACTGCAAAACGGCGTTGTACTCAGAGTGAAGTAGAGTGTGGAGCAACAGGAGCAGCAGGGCTGACAAGGGATTTTCTTGGAGTTGGTGCCCAAACTATTTGCCACTCCTCACCAACAATCAAGGGATGGATTTAG | 957 | 46.19 | MISKMAADGSNPSLGKKKRSLPGTPDPEAEVIALSPKTLMATKRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSNKEAKKRVYVCPETSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKSYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFISHRAFCDALAEEAARVSNAMAQHWVMYCDPVCQNPAVGDYYSRQLQEVNQTHMGTMSATALLQKAAEIGAISSSGHSVILEEGFVFNNGSEFCNSGTTNPIVVIGNENEMYTAKRRCTQSEVECGATGAAGLTRDFLGVGAQTICHSSPTIKGWI | 318 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 5562431 | 5563738 | - | Cp4.1LG16g04120.1 | Cpe16g00408 | 482783 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe16g00408 | 318 | Gene3D | Classic Zinc Finger | 42 | 68 | - | - | |
Cpe16g00408 | 318 | Gene3D | Classic Zinc Finger | 78 | 169 | - | - | |
Cpe16g00408 | 318 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 47 | 67 | IPR013087 | - | |
Cpe16g00408 | 318 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Cpe16g00408 | 318 | SUPERFAMILY | beta-beta-alpha zinc fingers | 43 | 141 | IPR036236 | - | |
Cpe16g00408 | 318 | PANTHER | ZINC FINGER PROTEIN MAGPIE | 214 | 310 | - | - | |
Cpe16g00408 | 318 | PANTHER | ZINC FINGER PROTEIN MAGPIE | 12 | 187 | - | - | |
Cpe16g00408 | 318 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 45 | 67 | IPR013087 | - | |
Cpe16g00408 | 318 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 12 | 187 | - | - | |
Cpe16g00408 | 318 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 214 | 310 | - | - | |
Cpe16g00408 | 318 | SMART | c2h2final6 | 45 | 67 | IPR013087 | - | |
Cpe16g00408 | 318 | SMART | c2h2final6 | 121 | 141 | IPR013087 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe04g00706 | Cpe16g00408 | CCT | |
Cpe05g01416 | Cpe16g00408 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe04g00156 | Cpe-Chr4:1515193 | Cpe16g00408 | Cpe-Chr16:5562431 | 1.01E-09 | dispersed | |
Cpe16g00408 | Cpe-Chr16:5562431 | Cpe17g00872 | Cpe-Chr17:6760175 | 1.69E-110 | dispersed | |
Cpe16g00408 | Cpe-Chr16:5562431 | Cpe04g00706 | Cpe-Chr4:7011986 | 2.58E-84 | wgd | |
Cpe16g00408 | Cpe-Chr16:5562431 | Cpe05g01416 | Cpe-Chr5:9928676 | 1.41E-152 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50709 | None | None | None | None | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe16g00408 | K25870 | - | cmax:111484111 | 627.091 |