Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00429 ATGGACTGGACTAGACGCCACGTCATCGGCCACGGCTCCTCCGCCACCGTCTTCCTTGCCACGGATTCTTCCTCCGGCGACGTTTTCGCCGTCAAATCCGCTGAGATTTCATACTCGCAATCTCTACAAACTGAGCGACAGTTTCTTTCTTCTTTAGCCTCTCCGTATGTCGTTTGTTATAGAGGGTGTGAGGTCCGGAGAGAACAGAGTGGGGTCGTGATGTTCAATCTTTTCATGGAGTATTTGCCCAACGGTTCGCTTGCCGACGTAATTCGCCGCCGTGGGGGTCGGCGGCTCGACGAGGCGGCAATCGGAATTTACACGCGGCAGTTACTACAAGGCCTACAGTACATTCATTCCAAAGGCTTGGTGCATTGCGACATTAAATCCCGAAACGTTTTGATCGGTCGTGACGGTGAGGCTAAATTGGCCGATTTCGGATGCGCCAAGTGGGCGAGCCAAACAGACTCAATTGGTGGCACGCCGCTGTTTATGGCACCAGAAGTGGCTCGTGGGGAGCACCAAGGACTCCCCTCTGACATTTGGTCCATTGGGTGTACGGTCATCGAAATGGCTACCGGCGGTGGCTCACCCTGGCCGAAAACAACCAGCGACACCGACCCAATTTCCGCTCTGTACCGAATTGGGTATTCCGGCGAGTCGCCGGAAATTCCATCCTGTTTATCCGACCAAGCAAAGGATTTTCTAGAGAAATGCTTAAGAAGGAATCCAAATGAGAGATGGACAGCCAATCAGCTTCTAAATCACCCATTTGTGGGGGAATTCAATTTCTCCCCAAAGAAAATCCAGGAAGTTCATTCGAATTCTCCAACGAGTATTCTAGAACAGGGCGTTTGGAGATCCATTGAAGAAAGTGAAATCAGAGAAGCCAAATCGTGTAGACCCAATAGTTGGGCAGCAGAGCAGATCCGACGGCTGTGGATGGCCTCAGGAGAGCCGAGCTGGAGAGATGATGAGAACTGGATTACAATTCGAAGACAGGACATTGGAAAAAGCAAAGAAGTCGGTGACGAAGGCGACACGATTGGTGGGTCAGAAGTGAAAGGCTGTAGTAATAATTATTGGGGTGAGAAACAGAGTGGCGGTGGCGGCAAGGAGTGGTCGGAAACGGAATTCACACAGAATAACGGTGGTTTTAGCTGCAGAATTAGTAGGAATGATTTGGCAGACCATCGTTGTAAGAACATTATTAGTCTTGTACATCATAATAATAATAATAATAATAATAATAATAATAACCCTTCAACTTTTCATACTCATACACCTAAATTTCTTCATTTAATGTCAACTATATTATGA 1320 47.95 MDWTRRHVIGHGSSATVFLATDSSSGDVFAVKSAEISYSQSLQTERQFLSSLASPYVVCYRGCEVRREQSGVVMFNLFMEYLPNGSLADVIRRRGGRRLDEAAIGIYTRQLLQGLQYIHSKGLVHCDIKSRNVLIGRDGEAKLADFGCAKWASQTDSIGGTPLFMAPEVARGEHQGLPSDIWSIGCTVIEMATGGGSPWPKTTSDTDPISALYRIGYSGESPEIPSCLSDQAKDFLEKCLRRNPNERWTANQLLNHPFVGEFNFSPKKIQEVHSNSPTSILEQGVWRSIEESEIREAKSCRPNSWAAEQIRRLWMASGEPSWRDDENWITIRRQDIGKSKEVGDEGDTIGGSEVKGCSNNYWGEKQSGGGGKEWSETEFTQNNGGFSCRISRNDLADHRCKNIISLVHHNNNNNNNNNNNPSTFHTHTPKFLHLMSTIL 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5648554 5649873 + Cp4.1LG16g04220.1 Cpe16g00429 482804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00429 439 SUPERFAMILY Protein kinase-like (PK-like) 2 309 IPR011009 -
Cpe16g00429 439 PRINTS Tyrosine kinase catalytic domain signature 79 92 IPR001245 GO:0004672|GO:0006468
Cpe16g00429 439 PRINTS Tyrosine kinase catalytic domain signature 117 135 IPR001245 GO:0004672|GO:0006468
Cpe16g00429 439 PRINTS Tyrosine kinase catalytic domain signature 179 201 IPR001245 GO:0004672|GO:0006468
Cpe16g00429 439 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 358 - -
Cpe16g00429 439 Gene3D Phosphorylase Kinase; domain 1 1 76 - -
Cpe16g00429 439 Pfam Protein kinase domain 5 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe16g00429 439 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 18 2 358 - -
Cpe16g00429 439 CDD STKc_MAPKKK 2 259 - -
Cpe16g00429 439 Gene3D Transferase(Phosphotransferase) domain 1 77 288 - -
Cpe16g00429 439 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Cpe16g00429 439 ProSiteProfiles Protein kinase domain profile. 3 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe16g00429 439 SMART serkin_6 3 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe16g00429 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe15g00739 Cpe16g00429 CCT
Cpe04g00721 Cpe16g00429 CCT
Cpe04g00721 Cpe16g00429 ECH
Cpe15g00739 Cpe16g00429 ECH
Cpe05g01434 Cpe16g00429 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00777 Cpe-Chr6:4906718 Cpe16g00429 Cpe-Chr16:5648554 4.27E-97 dispersed
Cpe16g00429 Cpe-Chr16:5648554 Cpe19g00624 Cpe-Chr19:5093380 2.88E-66 dispersed
Cpe15g00739 Cpe-Chr15:7711421 Cpe16g00429 Cpe-Chr16:5648554 9.59E-128 wgd
Cpe16g00429 Cpe-Chr16:5648554 Cpe19g00953 Cpe-Chr19:6785473 1.34E-98 wgd
Cpe16g00429 Cpe-Chr16:5648554 Cpe04g00721 Cpe-Chr4:7099314 2.95E-131 wgd
Cpe16g00429 Cpe-Chr16:5648554 Cpe05g01434 Cpe-Chr5:10022802 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62891 PF00069 Pkinase 5.90E-56 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00429 K20716 - csv:101208274 620.542