Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00443 ATGGAGAGCCTATTAGTTCTTACACTGATTAGTTCGATATGGGTATTTCTTGCTGGTTCTGCATGTTGCCAAAGGCCCGCGGTTGTGAACATTGGAGCAGTTTTCACTTTTGATTCCATTATAGGAAGAGCGGCGAAGGTGGCAATGGAAGCTGCAGTTTCGGATGTGAATGCAGATCCTTCCATTCTCAATGGAACAAGGCTAAATTTGATCATGGCAGATACACATTGCAATGTTCTCTTGGGTTCTATTCGAGCTTTCCAGGTTCTTGAGAAAGACGTAGTAGCCATAGTTGGGCCTCAATCTTCAGTTGTAGCTCATATGGTTCTACAGATTGCTAATCATCTCCAAGTGCCACTTATCTCATACGCTGCCACTGATCCAACTTTATCTGCCCTCCAATTCCCCTTTTTCCTACGGACTACTCAGAGTGATGCCTATCAAATGACTGCTATGGCAGAATTAATTGACTTTTATGAGTGGAAGGAAGTGATCATTATCTTTGTGGATGATGATTATGGTAGAAATGGAATGTCTACTTTAACGGATGAACTTGACAAGAAGATGTTTAAAGTTTCTTACAAACTACCCTTACCTTCTCAGTTGAATCTCAGTGAAATCACAGACATTCTCAATAAATCCAAGTTGCTCGGTCCCCGAGTTTATGTTGTTCATGTTAATCCTGATCCTAGATTAAGCATCTTCAAAATAGCCCATCAACTTGATATGATGACAAGTGATTATGTGTGGCTGGCAACAGATTGGCTTTCTTCTACCTTAGATTCTATTCTGCCCGTACACCAAACCTCTCTTAACATCCTTCAAGGAGTGGTTGTACTTCGTCAACATACGCCTGAATCCAGCCAAAAAACAACATTATGGTCTCGTTTAAGGAAGATGCTGCCAGAAGACTCGAGAAATTCTTCGATGAATGTCCATGCTCTTAGTGCCTATGATACCATTCAAGTAGTTGCACGTGCGATCGATAAGTTTCTAAATGGAGGTAGGAGCATTAGCTTCTCATTGAAGAACAAGTTTCATGATTTAAATACATCTAGAATGCCCTGGGGGAAGCTCAAAATATTTGATGATGGTGCTCTTCTTTTGAGCATATTGTTGCAGGCAAACTTTACTGGTTTAAGTGGTCGGATTGAGTTTAATTCAGATCGAAACATTGTCAGTAGAGGCTATGAGGTGATCAATATTGATCGGACGGGATTGCGTCGAGTTGGTTATTGGTCCAATGGCACAGGCTTTACTATCCAATCCCCAGAAGCTCTGAAACAGAAACGAATTACTTATACCCACCTGAATCAGACTCTTGGCAATGTTACCTGGCCTGGTGGAAAGACAGAAAGACCGCGTGGATGGGTGATTGCAGACAATGAAAGACCATTAATAATTGGAGTGCCACGCAGAGTAAGTTTCATTGAATTTGTTACAGCAGTCAATGGAAGCCACAAAAACATTCAAGGATACTGTATCGATCTGTTCAATGAAGCAAGAAAGCTGGTTCCCTACGATGTTCCTTACAGATTTATACCTTTTGGAAATGGCTACTCCAATCCTAGCTATGATGACCTTGTGAAGAACATTGCAAATGGTATATTTGATGCAGCTGTTGGAGATATTGCAATTGTAACCAATCGCACAAGGGTTGTGGATTTTTCTCAACCTTTTGCTTCTACTGGTCTTGTTATTGTGGCTCCAATAACAAATTCAAAGTCGAATGCTTGGGTGTTCCTCAAACCATTTACAGTCGAGATGTGGTGCGTTACCTCGGCCTCCTTCTTCATGATTGGAGCAGTCATATGGCTTCTCGAGCACCGAGTAAATGATGATTTCCGTGGTCCACCAAAGAGGCAGCTAGTGACAGTTATACTGTTCAGCTTCTCAACATTGTTCAAGACAAATCAGGAAGTTACAATAAGTCCACTTGGGCGTATGGTAATGGTGATGTGGCTTTTCTTATTGATGGTTATCACGTCAAGCTACACAGCCAGTCTCACTTCAATCCTTACAGTTCAGCAGCTTTCATCTCCCATTAAAGGACTTGAGGACTTGATTACTAAGGAACAGCCAATTGGGTACCAGGTAGGATCGTTCGCATTTAGCTATCTGACCGAGAGTCTTTACCTTCCACGATCGAGGCTCGTACCCCTAGGTTCTCCAGAAGAATATGAATCAGCATTGCTCAAAGGGCCATTCAAGAGAGGAGGGGTGGCGGCCATTATTGATGAACTTCCATATATGGAACTATTCTTATCAGGGAGGAACGATTTCGGAATGATCGGACAGCCATTCACCAAGAGTGGATGGGGATTTGCTTTTCAGAGAGGATCTCCACTTGCGGTAGACATTTCAACTGCAATTCTAAAGCTTTCTGAGAATGGAAAACTTCAGAAGATCCATGAGAAGTGGTTCTGCAAGATGGGTTGTCCTGGAGAGAGGAGAAGGAAACCTGAGCCTAACCAACTTCACTTGGTTAGCTTCTGGGGTCTATATCTGCTGTGCGGTGCCTTCTCACTCGTGTGTCTTTTTATATTTTTGTTTCGCATAGTTCGACAATTCACTCGCTACATACGACAACAGAAGGAATCGTCTCATGCAGAATTAGTGTCATCAAATTCAAACTCGAACTGGACTCAGGTTGTATACAAGTTTATCGACTTCGTTGATGAGAAGGAAGAAGCCATCAAGAGACTTTTTTCGAAAGCATGA 2721 42.23 MESLLVLTLISSIWVFLAGSACCQRPAVVNIGAVFTFDSIIGRAAKVAMEAAVSDVNADPSILNGTRLNLIMADTHCNVLLGSIRAFQVLEKDVVAIVGPQSSVVAHMVLQIANHLQVPLISYAATDPTLSALQFPFFLRTTQSDAYQMTAMAELIDFYEWKEVIIIFVDDDYGRNGMSTLTDELDKKMFKVSYKLPLPSQLNLSEITDILNKSKLLGPRVYVVHVNPDPRLSIFKIAHQLDMMTSDYVWLATDWLSSTLDSILPVHQTSLNILQGVVVLRQHTPESSQKTTLWSRLRKMLPEDSRNSSMNVHALSAYDTIQVVARAIDKFLNGGRSISFSLKNKFHDLNTSRMPWGKLKIFDDGALLLSILLQANFTGLSGRIEFNSDRNIVSRGYEVINIDRTGLRRVGYWSNGTGFTIQSPEALKQKRITYTHLNQTLGNVTWPGGKTERPRGWVIADNERPLIIGVPRRVSFIEFVTAVNGSHKNIQGYCIDLFNEARKLVPYDVPYRFIPFGNGYSNPSYDDLVKNIANGIFDAAVGDIAIVTNRTRVVDFSQPFASTGLVIVAPITNSKSNAWVFLKPFTVEMWCVTSASFFMIGAVIWLLEHRVNDDFRGPPKRQLVTVILFSFSTLFKTNQEVTISPLGRMVMVMWLFLLMVITSSYTASLTSILTVQQLSSPIKGLEDLITKEQPIGYQVGSFAFSYLTESLYLPRSRLVPLGSPEEYESALLKGPFKRGGVAAIIDELPYMELFLSGRNDFGMIGQPFTKSGWGFAFQRGSPLAVDISTAILKLSENGKLQKIHEKWFCKMGCPGERRRKPEPNQLHLVSFWGLYLLCGAFSLVCLFIFLFRIVRQFTRYIRQQKESSHAELVSSNSNSNWTQVVYKFIDFVDEKEEAIKRLFSKA 906
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5718124 5724103 + Cp4.1LG16g04510.1 Cpe16g00443 482818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00443 906 SUPERFAMILY Periplasmic binding protein-like II 441 808 - -
Cpe16g00443 906 Gene3D - 474 577 - -
Cpe16g00443 906 Gene3D - 144 418 - -
Cpe16g00443 906 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 11 902 - -
Cpe16g00443 906 SUPERFAMILY Periplasmic binding protein-like I 22 458 IPR028082 -
Cpe16g00443 906 Gene3D - 47 394 - -
Cpe16g00443 906 Pfam Receptor family ligand binding region 46 404 IPR001828 -
Cpe16g00443 906 Pfam Bacterial extracellular solute-binding proteins, family 3 487 808 IPR001638 -
Cpe16g00443 906 Gene3D - 756 815 - -
Cpe16g00443 906 PANTHER GLUTAMATE RECEPTOR 3.7 11 902 - -
Cpe16g00443 906 CDD PBP1_GABAb_receptor_plant 30 420 IPR044440 -
Cpe16g00443 906 PIRSF IGluLR_plant 1 905 IPR017103 -
Cpe16g00443 906 CDD GluR_Plant 464 808 - -
Cpe16g00443 906 Pfam Ligand-gated ion channel 809 839 IPR001320 GO:0015276|GO:0016020
Cpe16g00443 906 Gene3D - 578 711 - -
Cpe16g00443 906 SMART GluR_14 467 810 IPR001320 GO:0015276|GO:0016020
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00730 Cpe16g00443 CCT
Cpe05g01441 Cpe16g00443 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g00900 Cpe-Chr19:6550892 Cpe16g00443 Cpe-Chr16:5718124 1.36E-101 dispersed
Cpe16g00443 Cpe-Chr16:5718124 Cpe16g00445 Cpe-Chr16:5732335 0 proximal
Cpe16g00443 Cpe-Chr16:5718124 Cpe04g00730 Cpe-Chr4:7187633 0 wgd
Cpe16g00443 Cpe-Chr16:5718124 Cpe05g01441 Cpe-Chr5:10051077 5.37E-34 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00443 K05387 - csv:101215715 1663.66