Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00445 ATGAAGGTGTTTTGGATTAGGAGTGGTCATTGGGTCAGAACCAGAGCTTTGATCTTTGCATTGTTCTTTGAGATATGGATGCCTTTGGGAGTGATTGGTAATGGTGTCTCTCAAAACACAAACGTTTCTTCTTCGAATCCAAGGGTGTTGAACGTTGGAGTTCTGTTCACTCTTGATTCAGTCATTGGAAGGTCGGCACAGCCTGCGATTTTAGCTGCCGTGGACGATGTCAATGCCGATAACAGTGTTCTTACTGGAACAAAGCTGAAGTTGATCTTACATGACACGAACTGCAGTGGATTTCTTGGAACAGTTGAAGCCATGCAGATGATGGAAGATGAAGTAGTTGCTGCTATTGGGCCACAATCTTCAGGCATTGCTCATGTCATTTCCCATGTTATTAATGAACTCCATATACCTCTTCTATCATTTGGAGCTACAGATCCCACTTTATCTGCACTGCAATACCCGTATTTCGTTCGGACGACACAGAGTGATCACTTCCAGATGAACGCCATTGCTGATATGGTAGATTATTTCGGATGGAGAGAGGTCGTTGCCATCTTTGTAGATGATGATAATGGCAGGAGCGGGATATCGGCATTGAGTGACGCCTTGGCAAAGAAACGAGCCAGGATCTCTTATAAGGCTGCTTTCTCTCCTGGATCCCCCAATAGCGTAATAAGTGAATTGTTGGTTTCGATAAACCTGATGGAATCTCGGGTGTATATCGTACATGTCAATCCCGACACTGGTTTATCAGTGTTTTCATTAGCTAAGAAACTTCAGATGATGAGCAGTGGCTATGTCTGGATTGCAACAGATTGGCTTCCTTCTTTTCTTGATTCTTTTGAAACAAATAGTCCTGATATCATGAATCAGTTACAGGGCGTTGTAGCTCTTCGTCACCACACCCCGGACAGCGATCTGAAGAAAATTTTTGTCTCCAAATGGAAAGGACTAAAGTATAAGAAGAGTTCAAGCTTCAATTCTTATGCACTCTACGCATACGACTCTGTTTGGTTAGCAGCCCGTGCTCTCGACACGTTTCTTAAAGAAGGTGGACATATATCCTTTTCTACTGACCCCAAGCTACGTGAAAACAATGGTAGCATACTGCACTTAAAATCACTTCGAGTTTTTAATGGCGGCGAACAACTCTTACAGACAATCAAGAGAATGAACTTCACGGGTGTAAGTGGACGAATTCAGTTTGGTGATGACAGAAATTTGATTCATCCAGCTTATGATATCCTCAACATTGGGGGTACTGGTACACGTAGAATCGGTTACTGGTCGAATCATTCGGGTTTATCAACTATTGCACCAGAGAATCTGTATACAAAGCCTCTTAATGCTTCCCCAAATAACCATCTATACAGTGTAATATGGCCGGGTGAAGTAACGAGCGTTCCTCGAGGATGGGTGTTCCCGCACAACGGGAAACCATTGCAAATTGTAGTACCTAACCGTGTGAGCTACAAAGCGTTTGTATCTAAAGACAAGAACCCTCCAGGGGTTAAAGGGTATTGTATAGATGTCTTTGAAGCTGCCTTAAACTTGTTGCCTTACCCAGTTCCTCGCACATATATATTATATGGAGATGGAAAAGACACTCCTGAGTACAGCAATCTTGTATATGAAGTTTCACAGAATAAATATGATGCAGCTGTTGGAGATATTACGATTGTAACGAATAGGACGAAGATTGTGGACTTCACACAGCCATTTATGGAGTCGGGACTCGTTGTCGTTACCGTCGTCAACGAGGAGAAATCCAGTCCGTGGGCTTTTCTCAGGCCGTTTACTGTTCAAATGTGGGCTGTCACTGCCATATTCTTCATTTTCGTTGGAGCTGTTGTCTGGATTCTCGAGCACCGGACCAACGAAGAGTTCCGTGGTCCGCCGAGGCAACAACTCATTACAATATTCTGGTTTAGTTTCTCGACAATGTTCTTTTCTCACAAGGAAAACACCGTAAGCACCCTCGGACGGCTGGTGCTGATAATATGGCTCTTCGTCGTGTTAATTATCAATTCGAGCTACACAGCTAGTTTGACGTCGATCTTAACGGTGCAGCAGCTAACATCAAAGATCGAAGGGATTGATAGCTTAATCTCTGGCACAGATGCCATTGGAGTTCAAGAAGGGTCATTTGCATTGAATTATCTGATTAATGAGCTGAGTATAGCAGCTTCTAGGATCATTAAACTGAAAAATCAGGAGGAATATGCCGATGCTCTTCGACGTGGACCGGGGAATGGCGGGGTAGCTGCCATCGTTGATGAGCTTCCTTACGTCGAGCTTTTCTTGGCCGGGACGAACTGCATATTCAGGACGGTTGGACAGGAGTTCACCAAAAGTGGATGGGGATTTGCATTCCAAAGAGACTCTCCTCTTGCAGTTGATTTATCAACGGCCATTCTTCAACTCTCAGAGAACGGCGATCTTCAAAAGATCCATGACAAATGGCTGTCACGAACCGAGTGTTCAATGAGCCTAAACCAAGTCGACGTAAACCAACTATCACTAAGTAGCTTTTGGGGATTGTTCCTAATCTGTGGCATTGCCTGCTTTATTGCTCTTTCCATATTCTTCTTTCGAGTACTATTCCAATACCGAAGATTTACCCCCGAAACCCAGCCTGAAGTCGAGGATATCGAACCTGTTAGGACGAGACGCCTTAGTCGTACTACCAGCTTCATACACTTTGTAGATAAAAAAGAAGCAGAAATCAAAGGCAAGCTTAAAAGAAAAGCCAGTGAGAACAAACAAGCTAGCCAGAGCTCAGAGGCCCACCTTGATTCACCACCTTGA 2817 43.95 MKVFWIRSGHWVRTRALIFALFFEIWMPLGVIGNGVSQNTNVSSSNPRVLNVGVLFTLDSVIGRSAQPAILAAVDDVNADNSVLTGTKLKLILHDTNCSGFLGTVEAMQMMEDEVVAAIGPQSSGIAHVISHVINELHIPLLSFGATDPTLSALQYPYFVRTTQSDHFQMNAIADMVDYFGWREVVAIFVDDDNGRSGISALSDALAKKRARISYKAAFSPGSPNSVISELLVSINLMESRVYIVHVNPDTGLSVFSLAKKLQMMSSGYVWIATDWLPSFLDSFETNSPDIMNQLQGVVALRHHTPDSDLKKIFVSKWKGLKYKKSSSFNSYALYAYDSVWLAARALDTFLKEGGHISFSTDPKLRENNGSILHLKSLRVFNGGEQLLQTIKRMNFTGVSGRIQFGDDRNLIHPAYDILNIGGTGTRRIGYWSNHSGLSTIAPENLYTKPLNASPNNHLYSVIWPGEVTSVPRGWVFPHNGKPLQIVVPNRVSYKAFVSKDKNPPGVKGYCIDVFEAALNLLPYPVPRTYILYGDGKDTPEYSNLVYEVSQNKYDAAVGDITIVTNRTKIVDFTQPFMESGLVVVTVVNEEKSSPWAFLRPFTVQMWAVTAIFFIFVGAVVWILEHRTNEEFRGPPRQQLITIFWFSFSTMFFSHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLTSKIEGIDSLISGTDAIGVQEGSFALNYLINELSIAASRIIKLKNQEEYADALRRGPGNGGVAAIVDELPYVELFLAGTNCIFRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSRTECSMSLNQVDVNQLSLSSFWGLFLICGIACFIALSIFFFRVLFQYRRFTPETQPEVEDIEPVRTRRLSRTTSFIHFVDKKEAEIKGKLKRKASENKQASQSSEAHLDSPP 938
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5732335 5737759 + Cp4.1LG16g04520.1 Cpe16g00445 482820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00445 938 Pfam Ligand-gated ion channel 827 858 IPR001320 GO:0015276|GO:0016020
Cpe16g00445 938 Pfam Bacterial extracellular solute-binding proteins, family 3 494 826 IPR001638 -
Cpe16g00445 938 SUPERFAMILY Periplasmic binding protein-like I 44 476 IPR028082 -
Cpe16g00445 938 SUPERFAMILY Periplasmic binding protein-like II 460 826 - -
Cpe16g00445 938 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 63 79 - -
Cpe16g00445 938 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 123 151 - -
Cpe16g00445 938 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 336 348 - -
Cpe16g00445 938 Gene3D - 478 593 - -
Cpe16g00445 938 PANTHER GLUTAMATE RECEPTOR 3.4 35 920 - -
Cpe16g00445 938 Pfam Receptor family ligand binding region 67 422 IPR001828 -
Cpe16g00445 938 Gene3D - 778 832 - -
Cpe16g00445 938 PIRSF IGluLR_plant 14 937 IPR017103 -
Cpe16g00445 938 Gene3D - 69 413 - -
Cpe16g00445 938 CDD PBP1_GABAb_receptor_plant 51 439 IPR044440 -
Cpe16g00445 938 Gene3D - 594 734 - -
Cpe16g00445 938 CDD GluR_Plant 482 825 - -
Cpe16g00445 938 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 35 920 - -
Cpe16g00445 938 MobiDBLite consensus disorder prediction 915 938 - -
Cpe16g00445 938 SMART GluR_14 485 827 IPR001320 GO:0015276|GO:0016020
Cpe16g00445 938 Gene3D - 165 438 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00025 Cpe-Chr2:134377 Cpe16g00445 Cpe-Chr16:5732335 0 dispersed
Cpe04g00730 Cpe-Chr4:7187633 Cpe16g00445 Cpe-Chr16:5732335 0 dispersed
Cpe05g01441 Cpe-Chr5:10051077 Cpe16g00445 Cpe-Chr16:5732335 2.90E-11 dispersed
Cpe05g01442 Cpe-Chr5:10070811 Cpe16g00445 Cpe-Chr16:5732335 2.79E-37 dispersed
Cpe10g00717 Cpe-Chr10:4100639 Cpe16g00445 Cpe-Chr16:5732335 0 dispersed
Cpe15g00647 Cpe-Chr15:7172461 Cpe16g00445 Cpe-Chr16:5732335 0 dispersed
Cpe16g00445 Cpe-Chr16:5732335 Cpe19g00900 Cpe-Chr19:6550892 1.47E-121 dispersed
Cpe16g00443 Cpe-Chr16:5718124 Cpe16g00445 Cpe-Chr16:5732335 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00445 K05387 - csv:101215485 1691.4