Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe16g00448 | ATGCCCGCCGGAATTATGACACCGGCGAGAAACATGCCGTCGATGATTGGAAGAAATGGGAATAATGTTGGTGGATTTGTCTCTACTTCTGGCCTTGTTCTTTCTCAGAATCAACACGAGCGGCATGAGAACACCCAACTTCGAACAGAAAATGAGAAGCTTCGAGCCGATAACATGAGATATAGAGAAGCCCTTAGCAATGCCTCATGTCCCAATTGCGGCGGCCCTACTGCCATTGGTGAAATGTCTTTTGACGAACATCATCTTAGACTCGAAAACGCCCGTCTTCGCGAAGAGATCGATCGCATTTCAGCCATTGCTGCGAAGTACATAGGCAAGCCAGTAGTGAACTACCCTCTACTTTCTCCACCGAATCAATGGTCGACTCTATTTTCTGGAATTGTGTCTAGAGCTATGACGCTTGAAGTATTATCCACCGGAGTTGCTGGAAATTACAATGGAGCTCTACAAGTGCTGGTGAGCTCCGGCCAAGCTTTTGGGGCCAAACGGTGGGTTACAACCTTAGATCGCCAATGTGAACGGCTTGCCAGTGCCATGGCCACCAATATTTCCACCGGTGATGTTGGAGTTATAACGAATCAAGAAGGAAGAAAGAGCATGTTGAAGTTAGCTGAGAGAATGGTGATAAGCTTCTGCGCTGGAGTGAGCGCCTCCACAACCCACACATGGACTACTCTGTCCGGTACCGGTGCCGACGACGTTCGAGTCATGACCCGAAAGAGCATTGACGACCCCGGGAGACCTCCGGGTATTGTCTTGAGTGCTGCAACTTCCTTCTGGCTTCCTGTTCCGCCCAAAACAATCTTCGATTTCCTCCGAGATGAAAATTCTCGTAGCGAGTGGGACATTCTTTCCAATGGCGGAGTCGTTCAAGAAATGGCCCATATCGCCAACGGCCGCGACACTGGCAATTGCGTTTCTCTCTTACGCGTAAACAGCACGAATTCGAGCCAAAGCAACATGTTGATCCTGCAAGAAAGCTGCACGGACCCAACAGTGTCGTTCGTCATCTACGCCCCGGTTGACATAGTAGCGATGAACGTCGTCCTCAACGGCGGAGATCCGGACTACGTAGCGCTTCTCCCCTCAGGGTTCGCCATTCTCCCTGATGGCGGCGGTGGAGAGGGGGTTTCCGGTGGGTCGTTGCTGACAGTTGCATTTCAGATACTGGTGGATTCGGTGCCAACGGCCAAACTGTCACTTGGGTCAGTTGCAACGGTTAACAATCTGATTGCGTGTACGGTGGAGAGAATTAAAGCGTCATTATCATGTGAGGCTGCGTGA | 1305 | 50.73 | MPAGIMTPARNMPSMIGRNGNNVGGFVSTSGLVLSQNQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYIGKPVVNYPLLSPPNQWSTLFSGIVSRAMTLEVLSTGVAGNYNGALQVLVSSGQAFGAKRWVTTLDRQCERLASAMATNISTGDVGVITNQEGRKSMLKLAERMVISFCAGVSASTTHTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWLPVPPKTIFDFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSTNSSQSNMLILQESCTDPTVSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGGGGEGVSGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCEAA | 434 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 5744649 | 5749637 | - | Cp4.1LG16g04580.1 | Cpe16g00448 | 482823 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe16g00448 | 434 | PANTHER | HOMEOBOX LEUCINE ZIPPER PROTEIN | 159 | 431 | - | - | |
| Cpe16g00448 | 434 | SUPERFAMILY | Bet v1-like | 200 | 426 | - | - | |
| Cpe16g00448 | 434 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 | 124 | 159 | IPR042160 | - | |
| Cpe16g00448 | 434 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 | 159 | 431 | IPR042160 | - | |
| Cpe16g00448 | 434 | Coils | Coil | 37 | 64 | - | - | |
| Cpe16g00448 | 434 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 | 36 | 123 | IPR042160 | - | |
| Cpe16g00448 | 434 | PANTHER | HOMEOBOX LEUCINE ZIPPER PROTEIN | 124 | 159 | - | - | |
| Cpe16g00448 | 434 | PANTHER | HOMEOBOX LEUCINE ZIPPER PROTEIN | 36 | 123 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe15g00750 | Cpe16g00448 | CCT | |
| Cpe04g00733 | Cpe16g00448 | CCT | |
| Cpe04g00733 | Cpe16g00448 | ECH | |
| Cpe15g00750 | Cpe16g00448 | ECH | |
| Cpe05g01445 | Cpe16g00448 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe10g00792 | Cpe-Chr10:4503487 | Cpe16g00448 | Cpe-Chr16:5744649 | 1.23E-66 | dispersed | |
| Cpe16g00448 | Cpe-Chr16:5744649 | Cpe20g00379 | Cpe-Chr20:2136801 | 4.91E-11 | dispersed | |
| Cpe15g00750 | Cpe-Chr15:7784636 | Cpe16g00448 | Cpe-Chr16:5744649 | 2.47E-51 | wgd | |
| Cpe16g00448 | Cpe-Chr16:5744649 | Cpe19g00972 | Cpe-Chr19:6850520 | 6.20E-149 | wgd | |
| Cpe16g00448 | Cpe-Chr16:5744649 | Cpe04g00733 | Cpe-Chr4:7208678 | 1.55E-19 | wgd | |
| Cpe16g00448 | Cpe-Chr16:5744649 | Cpe05g01445 | Cpe-Chr5:10078047 | 1.79E-06 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe16g00448 | K09338 | - | csv:101214763 | 510.76 |