Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00449 ATGGGAATGGAGGCCTTCAATAAGCAGATACAAGAGGTTGAGGTACAAGTAGATAAGCTTTCTGGGCTTCTTATCAAACTCAAGCGTATGGAAAAGGATATCGATGAAGTGGGAAAAATAGCTCGCAATGTCAAAGGGAAGCTGGAAGCTCTAAATAAAGATAACTTGACCAATAGGCAGAAGCCTGGGTGCCAAAAGGGAACAGCCATTGACAGAGCAAGAATGAACATGACAAATTCCTTAACAAAAAAGTTCAAGGATTTGATGATAGAATTTCAGGCCCTTCGTCAAAGAATTCAAGACGAGTACCGTGAAGTCGTGGAACGACGAGTGATTACAGTTACCGGTACCCGACCAGATGAGACGATGATTGATGAACTTATAGAAACTGGAAATAGTGAACAAATATTCCAGAATGCATTTGAACATATGGGACGAGGAATGGTAACGAACGCAGTCGACCACGTTCGAACAGGAACCGATGCACTCCATACAGCAAAAGGTTTGCAAAAGAAATCAAGAAAATGCATGATGATCGCCATCATATTGCTGCTGGTTATAGCACTCATAATAGTCCTCTCAGTGCTGAAGCCATGGAAGAAGTAA 606 41.91 MGMEAFNKQIQEVEVQVDKLSGLLIKLKRMEKDIDEVGKIARNVKGKLEALNKDNLTNRQKPGCQKGTAIDRARMNMTNSLTKKFKDLMIEFQALRQRIQDEYREVVERRVITVTGTRPDETMIDELIETGNSEQIFQNAFEHMGRGMVTNAVDHVRTGTDALHTAKGLQKKSRKCMMIAIILLLVIALIIVLSVLKPWKK 201
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
16 5752206 5759297 + Cp4.1LG16g04480.1 Cpe16g00449 482824
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00449 201 SUPERFAMILY t-snare proteins 2 146 IPR010989 GO:0016020|GO:0016192
Cpe16g00449 201 Pfam Syntaxin 28 163 IPR006011 GO:0016020
Cpe16g00449 201 Coils Coil 3 30 - -
Cpe16g00449 201 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 1 27 - -
Cpe16g00449 201 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 28 151 - -
Cpe16g00449 201 Gene3D - 146 197 - -
Cpe16g00449 201 Gene3D - 1 107 - -
Cpe16g00449 201 Pfam SNARE domain 149 192 IPR000727 -
Cpe16g00449 201 SMART SynN_4 1 104 IPR006011 GO:0016020
Cpe16g00449 201 CDD SynN 3 140 IPR006011 GO:0016020
Cpe16g00449 201 PANTHER SYNTAXIN 28 151 IPR045242 -
Cpe16g00449 201 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 149 196 - -
Cpe16g00449 201 PANTHER SYNTAXIN 149 196 IPR045242 -
Cpe16g00449 201 PANTHER SYNTAXIN 1 27 IPR045242 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cpe05g01447 Cpe16g00449 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00449 Cpe-Chr16:5752206 Cpe20g00409 Cpe-Chr20:2339171 1.55E-34 dispersed
Cpe16g00449 Cpe-Chr16:5752206 Cpe05g01447 Cpe-Chr5:10094018 2.58E-50 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00449 K08486 - csv:101214355 283.493