Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe16g00449 | ATGGGAATGGAGGCCTTCAATAAGCAGATACAAGAGGTTGAGGTACAAGTAGATAAGCTTTCTGGGCTTCTTATCAAACTCAAGCGTATGGAAAAGGATATCGATGAAGTGGGAAAAATAGCTCGCAATGTCAAAGGGAAGCTGGAAGCTCTAAATAAAGATAACTTGACCAATAGGCAGAAGCCTGGGTGCCAAAAGGGAACAGCCATTGACAGAGCAAGAATGAACATGACAAATTCCTTAACAAAAAAGTTCAAGGATTTGATGATAGAATTTCAGGCCCTTCGTCAAAGAATTCAAGACGAGTACCGTGAAGTCGTGGAACGACGAGTGATTACAGTTACCGGTACCCGACCAGATGAGACGATGATTGATGAACTTATAGAAACTGGAAATAGTGAACAAATATTCCAGAATGCATTTGAACATATGGGACGAGGAATGGTAACGAACGCAGTCGACCACGTTCGAACAGGAACCGATGCACTCCATACAGCAAAAGGTTTGCAAAAGAAATCAAGAAAATGCATGATGATCGCCATCATATTGCTGCTGGTTATAGCACTCATAATAGTCCTCTCAGTGCTGAAGCCATGGAAGAAGTAA | 606 | 41.91 | MGMEAFNKQIQEVEVQVDKLSGLLIKLKRMEKDIDEVGKIARNVKGKLEALNKDNLTNRQKPGCQKGTAIDRARMNMTNSLTKKFKDLMIEFQALRQRIQDEYREVVERRVITVTGTRPDETMIDELIETGNSEQIFQNAFEHMGRGMVTNAVDHVRTGTDALHTAKGLQKKSRKCMMIAIILLLVIALIIVLSVLKPWKK | 201 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 5752206 | 5759297 | + | Cp4.1LG16g04480.1 | Cpe16g00449 | 482824 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe16g00449 | 201 | SUPERFAMILY | t-snare proteins | 2 | 146 | IPR010989 | GO:0016020|GO:0016192 | |
| Cpe16g00449 | 201 | Pfam | Syntaxin | 28 | 163 | IPR006011 | GO:0016020 | |
| Cpe16g00449 | 201 | Coils | Coil | 3 | 30 | - | - | |
| Cpe16g00449 | 201 | PANTHER | SYNTAXIN OF PLANTS 122 PROTEIN | 1 | 27 | - | - | |
| Cpe16g00449 | 201 | PANTHER | SYNTAXIN OF PLANTS 122 PROTEIN | 28 | 151 | - | - | |
| Cpe16g00449 | 201 | Gene3D | - | 146 | 197 | - | - | |
| Cpe16g00449 | 201 | Gene3D | - | 1 | 107 | - | - | |
| Cpe16g00449 | 201 | Pfam | SNARE domain | 149 | 192 | IPR000727 | - | |
| Cpe16g00449 | 201 | SMART | SynN_4 | 1 | 104 | IPR006011 | GO:0016020 | |
| Cpe16g00449 | 201 | CDD | SynN | 3 | 140 | IPR006011 | GO:0016020 | |
| Cpe16g00449 | 201 | PANTHER | SYNTAXIN | 28 | 151 | IPR045242 | - | |
| Cpe16g00449 | 201 | PANTHER | SYNTAXIN OF PLANTS 122 PROTEIN | 149 | 196 | - | - | |
| Cpe16g00449 | 201 | PANTHER | SYNTAXIN | 149 | 196 | IPR045242 | - | |
| Cpe16g00449 | 201 | PANTHER | SYNTAXIN | 1 | 27 | IPR045242 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe05g01447 | Cpe16g00449 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe16g00449 | Cpe-Chr16:5752206 | Cpe20g00409 | Cpe-Chr20:2339171 | 1.55E-34 | dispersed | |
| Cpe16g00449 | Cpe-Chr16:5752206 | Cpe05g01447 | Cpe-Chr5:10094018 | 2.58E-50 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe16g00449 | K08486 | - | csv:101214355 | 283.493 |