Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00466 ATGAGAGGAGTAGCAGCCATGATCTTCAAATTATGCATCTTGTTCTTATTATTACTTCCATCCTCCGCAGATAATTTCAATATATTAAGAGACAGTAATGAAGATTCTCAAGTCTCTGATGGAGGAAGATTTGAACTTGGATTCTTCACACCAGAGGGAGCCTCAGAAGCCACAAGATACGTTGGTATATGGTTTCATAATTCCAAACCGCGGATCGTTGTGTGGGTTGCTAACAGAGACCAACCACTGTCCGACAAGAATGGAGTTTTTGCTATCAAAGATGGCAATCTCGAGGTATTGGCATCAAACGGCACTTCTTTATGGTCCACCGCCCTCGAGAAATCTCCCAATTCAAAAATGGAGCTGATGGCTTCTGGGAATTTAGTTCTCAAGGAATTAGGCGTCAATGGCACAACTCTGTGGCAAAGCTTCCAAAATCCAACCGATACATTTCTTCCGGGCATGAACATGACCGACGACTTGAAGTTGACTTCTTGGAAAGCTTCAGACGACCCCTCGCCTGGGAATTTTACGTTTCTCAAGGATATAAAAGGCCGCTTCGTCATCGAGAAAAGTGGTTCGCAGTATTGGGTCGGCAAGGAACTATGGCAAAATTTCTCAACCGAGACTGATGGAAATATTGCTGAAGCCATGGACTTATTGTCAAAGATTAGTATCAGTGATTTGAAGGCCACCAACTACACCGTTCGTTTTCAAAATCAAGACTTGGATTACAACTACACAAGAGCAGTTATGGATTTCAGTGGGAAGGTACAGTTCCTTGCTAGAAACAGAACGACTGGGGAATGGGATGTCATCTGGTCGGAGCCGAGAAACAAATGTGATGTCGTATCAGCTTGTGGGACCTTCGCTAGCTGTCGGAGTGACACTAAACATACTTGCAGGTGCTTGCCTGGGTTTGAGCCCACGTCCAAGGATGAATGGGGTTCTGGTGATTACTCACATGGGTGCAAGAGAAAATCAGAAATTTGCATCAAAGAAGTGGTTGAAACTCGAGAGTTTTTGAAATTAAATATGAAGGTGAAAAGATCGTCTAATATTGTGAAAGTAAATATTGGGGAATGCTTAAGGAAGTGCCTTGAATCTTGTACATGTGAGGCGTATGCTGAAATAGAAGACAGCAGAGCCGAATTTGTGTGCATCATTTGGGAGGATGACCTCGAAAACATTTGGGAATATGCAGATGGTGGTGGCGACGTTCACATTCGTATCAAACGTTCTGACATTGAATTGACAGAGCTCGATTGTGAACCATGTGGCAGCAACATCGTGCCTTATCCTTTGAGTCTGAGCACAGAATTCGACTGCGGTGTTCCTCTATATCGTAACTTTAGCTGCAACACTTCCGCTGGTCAGGTCCTCTTTCACACGACACATGATGACTACAACGTCACCAACATGAACCCACAACTAAGAACTTTTACCATTGCAACAAACGGGTCTATCTGCAGAGGAAATGATATAGATGCAATTCAAAAGCTTCTGAAACTGGATCGCTCGTCTACATTCAAAGTAAGCAGCGGTTGTGACTCTGAATTCAATGAAATTGATATTCAATGGGAGAAACCACTAGAACCAATCTGCAATTCGCCAAGAGGTTGCACCAAATGGCTGAATTCAACATGCAAATCAACAACAGATGGAACAAATACAAATAGATGCTTGTGCAATCCTCCTTTAGAGTGGACTGGCATGGGATGCCTTAAACCAACAGTAAAAGTTCTGATCTTGACATTTTCTTCTCTATTGGTAGATCGAACGCAATGTTTATTGATGAACTGGGAGATGCGTTTTAATATCATCATGGGCATTGCTCGAGGACTAGTTTATTTGCATGAAGATTCAAGGTTGAGGATTATCCACAGAGATATGAAAACAAGCAATATTCTGTTGGATGCAGAAATGAATCCTAAAGTCTCAGACTTTGGTTTAGCAAGAATCTTTGATGCCAATCAAATAGAGGGAATCACCAACAGAGTTGTTGGAACCTTCGGGTACATGCCACCAGAATATGCATTGGATGGATCATTCTCAGTGAAATCAGACGTGTTCAGTTTTGGTATAGTTGTGTTGGAGATTGTTAGTGGGAGAAAGAACACAGGGTTCTACCAGTCCAAAGAAGCACTGAACCTTCTTGGATATGTATGGAAGTTGTGGAGAGAACACAGAGCAATGGAGATCGTCGAGGCGACGGTGCGAGAAAGGTGCAGTCCAAGTGAAGCTGTTAAATGTGTGGCTGTGGGGTTGCTGTGTGTGCAAGAAGACCCTAAGGATCGCCCCACCATGTCAAATGCAGTGTTTATGCTGAGCTCTGGCAGTGATCCTGCTTCTCTTCCAAATCCTAAGCAGCCGGCTTTCCTTGATAAGAGGTCCACTCCTTCTACTTCTTATGCCACCTCTTCTTCTGAGTTTAGGCAAGAAATTGCAAGTAATGATTATAGCTTACTTGAGCCTCGCTAA 2481 43.17 MRGVAAMIFKLCILFLLLLPSSADNFNILRDSNEDSQVSDGGRFELGFFTPEGASEATRYVGIWFHNSKPRIVVWVANRDQPLSDKNGVFAIKDGNLEVLASNGTSLWSTALEKSPNSKMELMASGNLVLKELGVNGTTLWQSFQNPTDTFLPGMNMTDDLKLTSWKASDDPSPGNFTFLKDIKGRFVIEKSGSQYWVGKELWQNFSTETDGNIAEAMDLLSKISISDLKATNYTVRFQNQDLDYNYTRAVMDFSGKVQFLARNRTTGEWDVIWSEPRNKCDVVSACGTFASCRSDTKHTCRCLPGFEPTSKDEWGSGDYSHGCKRKSEICIKEVVETREFLKLNMKVKRSSNIVKVNIGECLRKCLESCTCEAYAEIEDSRAEFVCIIWEDDLENIWEYADGGGDVHIRIKRSDIELTELDCEPCGSNIVPYPLSLSTEFDCGVPLYRNFSCNTSAGQVLFHTTHDDYNVTNMNPQLRTFTIATNGSICRGNDIDAIQKLLKLDRSSTFKVSSGCDSEFNEIDIQWEKPLEPICNSPRGCTKWLNSTCKSTTDGTNTNRCLCNPPLEWTGMGCLKPTVKVLILTFSSLLVDRTQCLLMNWEMRFNIIMGIARGLVYLHEDSRLRIIHRDMKTSNILLDAEMNPKVSDFGLARIFDANQIEGITNRVVGTFGYMPPEYALDGSFSVKSDVFSFGIVVLEIVSGRKNTGFYQSKEALNLLGYVWKLWREHRAMEIVEATVRERCSPSEAVKCVAVGLLCVQEDPKDRPTMSNAVFMLSSGSDPASLPNPKQPAFLDKRSTPSTSYATSSSEFRQEIASNDYSLLEPR 826
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5822759 5827283 - Cp4.1LG16g04810.1 Cpe16g00466 482841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00466 826 MobiDBLite consensus disorder prediction 779 810 - -
Cpe16g00466 826 Pfam PAN-like domain 341 396 IPR003609 -
Cpe16g00466 826 Gene3D - 30 145 IPR036426 -
Cpe16g00466 826 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 27 444 - -
Cpe16g00466 826 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 589 816 - -
Cpe16g00466 826 SMART blect_4 28 147 IPR001480 -
Cpe16g00466 826 Pfam Protein kinase domain 597 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe16g00466 826 Pfam S-locus glycoprotein domain 226 310 IPR000858 GO:0048544
Cpe16g00466 826 Gene3D Transferase(Phosphotransferase) domain 1 587 785 - -
Cpe16g00466 826 Pfam D-mannose binding lectin 73 162 IPR001480 -
Cpe16g00466 826 CDD B_lectin 38 147 IPR001480 -
Cpe16g00466 826 PIRSF SRK 1 434 IPR024171 GO:0004674
Cpe16g00466 826 PIRSF SRK 585 825 IPR024171 GO:0004674
Cpe16g00466 826 ProSiteProfiles Protein kinase domain profile. 451 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe16g00466 826 ProSiteProfiles Bulb-type lectin domain profile. 23 143 IPR001480 -
Cpe16g00466 826 SUPERFAMILY Protein kinase-like (PK-like) 588 794 IPR011009 -
Cpe16g00466 826 MobiDBLite consensus disorder prediction 794 810 - -
Cpe16g00466 826 ProSiteProfiles PAN/Apple domain profile. 331 414 IPR003609 -
Cpe16g00466 826 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 172 IPR036426 -
Cpe16g00466 826 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 27 444 - -
Cpe16g00466 826 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 589 816 - -
Cpe16g00466 826 SMART serkin_6 475 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe16g00466 826 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00466 Cpe-Chr16:5822759 Cpe09g00876 Cpe-Chr9:8023160 1.64E-26 dispersed
Cpe15g00772 Cpe-Chr15:7885245 Cpe16g00466 Cpe-Chr16:5822759 4.02E-86 wgd
Cpe16g00466 Cpe-Chr16:5822759 Cpe19g00983 Cpe-Chr19:6910868 2.84E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62892 PF00069 Pkinase 6.30E-27 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00466 - - cpep:111777045 1191.02