Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe16g00480 | ATGGGGAGCTGTTTGTCTAGTGGCAATCAGAGTAGTTGTAATGGTGGAAGCAATGGAGAGGGAGTTTTTGAATCCTGTTTGGGGAATGGAGTTTGTGGTCGGATTGAAAGAAACAGAACATTCTCAGATCATGTTTTCTCTTTGCAGCATTTGAATTCTGTACCTAATAGACTTGTTTATAATGGGAAGACTTCAAATTCTTGCATTTTTACTCAACAAGGTCGAAAGGGTATTAACCAGGATGCCATGGTTGTATGGGAAGACTTCATATCAGATGGTGCGATTTTCTGTGGCCTATTTGATGGTCATGGTCCACACGGTCACGTAGTTGCACGAAAGGGCTCGGATCTATTCGTGGGAAGTATTGGGGACTCTCGAGCGATTCTTGGATCGAAAGACAGCAGTGATTCTCTTGTAGCAACACAATTGACAGTAGATCTAAAGCCCGATCTGCCCAGAGAGGCTGAAAGGATAAAGAAGTGTAAAGGAAGGGTGTTTGCATTGCATGATGAACCAGAAGTCCCAAGAGTGTGGCTGCCATTTGACAACGCGCCAGGATTAGCCATGGCTCGAGCATTTGGCGACTTCTGTTTGAAGGACTATGGAGTTATCTCTATTCCCGAGTTCTCACACCGCGCGCTTACAGATAATGATCTGTTTGTTGTTCTTGCTTCAGATGGGGTTTGGGACGTATTGAGCAACGACGAGGTGGTTGAGATAGTTTATTCTGCCTCGACTAGGTCATCGGCAGCTCGAATGGTGGTAGACTTGGCTGCTCGGGAGTGGAAGCTCAAGTACCCTACTTCGAAAATGGACGACTGTGCAGTCGTTTGCCTGTTCTTGGATGGGAAAATGGATTCAGAGTCAGAAAATGAAGAACAAGCTTCTTGTGCAACTCTTGAAACCAATCAAATGAGTAACACAGAATGTTCAGATGAAGAGCAGAGGTCTGGTGAGCCGAGTTTGCAACGGAATTATACGGTTCGATCATCGTCGGAAGAAAAGGACCAAATTGGAGGATTACATTCACATAGTGAAGAGAATGAGGAATCAATGTCTGCTGAAGATGAGAATTGGCTGGGACTGGAGGGTGTAACAAGAGTAAACTCTTTGGTTCAACTTCCTAGATTTTCTTGA | 1137 | 44.68 | MGSCLSSGNQSSCNGGSNGEGVFESCLGNGVCGRIERNRTFSDHVFSLQHLNSVPNRLVYNGKTSNSCIFTQQGRKGINQDAMVVWEDFISDGAIFCGLFDGHGPHGHVVARKGSDLFVGSIGDSRAILGSKDSSDSLVATQLTVDLKPDLPREAERIKKCKGRVFALHDEPEVPRVWLPFDNAPGLAMARAFGDFCLKDYGVISIPEFSHRALTDNDLFVVLASDGVWDVLSNDEVVEIVYSASTRSSAARMVVDLAAREWKLKYPTSKMDDCAVVCLFLDGKMDSESENEEQASCATLETNQMSNTECSDEEQRSGEPSLQRNYTVRSSSEEKDQIGGLHSHSEENEESMSAEDENWLGLEGVTRVNSLVQLPRFS | 378 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 5897634 | 5900482 | - | Cp4.1LG16g04790.1 | Cpe16g00480 | 482855 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe16g00480 | 378 | Gene3D | - | 53 | 111 | IPR036457 | - | |
| Cpe16g00480 | 378 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 281 | IPR001932 | - | |
| Cpe16g00480 | 378 | SUPERFAMILY | PP2C-like | 58 | 283 | IPR036457 | - | |
| Cpe16g00480 | 378 | PANTHER | PROTEIN PHOSPHATASE 2C 52-RELATED | 1 | 113 | - | - | |
| Cpe16g00480 | 378 | PANTHER | PROTEIN PHOSPHATASE 2C 52-RELATED | 113 | 370 | - | - | |
| Cpe16g00480 | 378 | SMART | PP2C_4 | 55 | 279 | IPR001932 | - | |
| Cpe16g00480 | 378 | MobiDBLite | consensus disorder prediction | 304 | 358 | - | - | |
| Cpe16g00480 | 378 | Gene3D | - | 112 | 295 | IPR036457 | - | |
| Cpe16g00480 | 378 | MobiDBLite | consensus disorder prediction | 329 | 349 | - | - | |
| Cpe16g00480 | 378 | PANTHER | ALPHABET, ISOFORM E-RELATED | 1 | 113 | - | - | |
| Cpe16g00480 | 378 | PANTHER | ALPHABET, ISOFORM E-RELATED | 113 | 370 | - | - | |
| Cpe16g00480 | 378 | CDD | PP2Cc | 72 | 281 | IPR001932 | - | |
| Cpe16g00480 | 378 | Pfam | Protein phosphatase 2C | 109 | 258 | IPR001932 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe04g00768 | Cpe16g00480 | CCT | |
| Cpe15g00794 | Cpe16g00480 | CCT | |
| Cpe05g01484 | Cpe16g00480 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe12g00295 | Cpe-Chr12:1959552 | Cpe16g00480 | Cpe-Chr16:5897634 | 3.34E-80 | dispersed | |
| Cpe16g00480 | Cpe-Chr16:5897634 | Cpe11g00714 | Cpe-Chr11:5285265 | 3.79E-24 | dispersed | |
| Cpe15g00794 | Cpe-Chr15:8009641 | Cpe16g00480 | Cpe-Chr16:5897634 | 3.09E-42 | wgd | |
| Cpe16g00480 | Cpe-Chr16:5897634 | Cpe05g01484 | Cpe-Chr5:10246340 | 1.59E-64 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe16g00480 | - | - | cmax:111469610 | 441.81 |