Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00480 ATGGGGAGCTGTTTGTCTAGTGGCAATCAGAGTAGTTGTAATGGTGGAAGCAATGGAGAGGGAGTTTTTGAATCCTGTTTGGGGAATGGAGTTTGTGGTCGGATTGAAAGAAACAGAACATTCTCAGATCATGTTTTCTCTTTGCAGCATTTGAATTCTGTACCTAATAGACTTGTTTATAATGGGAAGACTTCAAATTCTTGCATTTTTACTCAACAAGGTCGAAAGGGTATTAACCAGGATGCCATGGTTGTATGGGAAGACTTCATATCAGATGGTGCGATTTTCTGTGGCCTATTTGATGGTCATGGTCCACACGGTCACGTAGTTGCACGAAAGGGCTCGGATCTATTCGTGGGAAGTATTGGGGACTCTCGAGCGATTCTTGGATCGAAAGACAGCAGTGATTCTCTTGTAGCAACACAATTGACAGTAGATCTAAAGCCCGATCTGCCCAGAGAGGCTGAAAGGATAAAGAAGTGTAAAGGAAGGGTGTTTGCATTGCATGATGAACCAGAAGTCCCAAGAGTGTGGCTGCCATTTGACAACGCGCCAGGATTAGCCATGGCTCGAGCATTTGGCGACTTCTGTTTGAAGGACTATGGAGTTATCTCTATTCCCGAGTTCTCACACCGCGCGCTTACAGATAATGATCTGTTTGTTGTTCTTGCTTCAGATGGGGTTTGGGACGTATTGAGCAACGACGAGGTGGTTGAGATAGTTTATTCTGCCTCGACTAGGTCATCGGCAGCTCGAATGGTGGTAGACTTGGCTGCTCGGGAGTGGAAGCTCAAGTACCCTACTTCGAAAATGGACGACTGTGCAGTCGTTTGCCTGTTCTTGGATGGGAAAATGGATTCAGAGTCAGAAAATGAAGAACAAGCTTCTTGTGCAACTCTTGAAACCAATCAAATGAGTAACACAGAATGTTCAGATGAAGAGCAGAGGTCTGGTGAGCCGAGTTTGCAACGGAATTATACGGTTCGATCATCGTCGGAAGAAAAGGACCAAATTGGAGGATTACATTCACATAGTGAAGAGAATGAGGAATCAATGTCTGCTGAAGATGAGAATTGGCTGGGACTGGAGGGTGTAACAAGAGTAAACTCTTTGGTTCAACTTCCTAGATTTTCTTGA 1137 44.68 MGSCLSSGNQSSCNGGSNGEGVFESCLGNGVCGRIERNRTFSDHVFSLQHLNSVPNRLVYNGKTSNSCIFTQQGRKGINQDAMVVWEDFISDGAIFCGLFDGHGPHGHVVARKGSDLFVGSIGDSRAILGSKDSSDSLVATQLTVDLKPDLPREAERIKKCKGRVFALHDEPEVPRVWLPFDNAPGLAMARAFGDFCLKDYGVISIPEFSHRALTDNDLFVVLASDGVWDVLSNDEVVEIVYSASTRSSAARMVVDLAAREWKLKYPTSKMDDCAVVCLFLDGKMDSESENEEQASCATLETNQMSNTECSDEEQRSGEPSLQRNYTVRSSSEEKDQIGGLHSHSEENEESMSAEDENWLGLEGVTRVNSLVQLPRFS 378
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
16 5897634 5900482 - Cp4.1LG16g04790.1 Cpe16g00480 482855
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00480 378 Gene3D - 53 111 IPR036457 -
Cpe16g00480 378 ProSiteProfiles PPM-type phosphatase domain profile. 1 281 IPR001932 -
Cpe16g00480 378 SUPERFAMILY PP2C-like 58 283 IPR036457 -
Cpe16g00480 378 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 1 113 - -
Cpe16g00480 378 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 113 370 - -
Cpe16g00480 378 SMART PP2C_4 55 279 IPR001932 -
Cpe16g00480 378 MobiDBLite consensus disorder prediction 304 358 - -
Cpe16g00480 378 Gene3D - 112 295 IPR036457 -
Cpe16g00480 378 MobiDBLite consensus disorder prediction 329 349 - -
Cpe16g00480 378 PANTHER ALPHABET, ISOFORM E-RELATED 1 113 - -
Cpe16g00480 378 PANTHER ALPHABET, ISOFORM E-RELATED 113 370 - -
Cpe16g00480 378 CDD PP2Cc 72 281 IPR001932 -
Cpe16g00480 378 Pfam Protein phosphatase 2C 109 258 IPR001932 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cpe04g00768 Cpe16g00480 CCT
Cpe15g00794 Cpe16g00480 CCT
Cpe05g01484 Cpe16g00480 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00295 Cpe-Chr12:1959552 Cpe16g00480 Cpe-Chr16:5897634 3.34E-80 dispersed
Cpe16g00480 Cpe-Chr16:5897634 Cpe11g00714 Cpe-Chr11:5285265 3.79E-24 dispersed
Cpe15g00794 Cpe-Chr15:8009641 Cpe16g00480 Cpe-Chr16:5897634 3.09E-42 wgd
Cpe16g00480 Cpe-Chr16:5897634 Cpe05g01484 Cpe-Chr5:10246340 1.59E-64 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00480 - - cmax:111469610 441.81