Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe16g00505 | ATGCTTCCTCTGCGTTCATGCTACTGTTTACGCCCCATTACATTGGTTCATCCTCAATTCAAGAAACTCATCTTCTCCAACAAACCTCCCTCTGTCAAACCCATTTTTAAGAATTTTGTTTCAGCAATGTCTTCTCGTCCTTCTGCTTTCGATGCTCTCATGTCCGGTGCTCGGGCCGCTGCCAAGAAGAAGCCTGTAAATTCTTCTCCCAAGAAGCGTAAAGCCCTAGATTCTTTAGACCCTCCTCCGAAATCTAACTCTTCCCTGGCTTTGGAGTCAACGCCGCCTGTTGAATCGCAGTGCGGTAGTTCAACCTCAACTTTGGATAATCATGGATATCCTAATCTGGTTAAGTCCGAGGAAGCTGTAGATTTGGGGGAAACCAAGTTGCGTCAGGATGATGGTGGGAATTTTGGAGGCAAGATTGGGCCGGTTGCGAATAAGAAGTGCGCGTCTAGTGTTCAAGAAAGAACTGCGAAATTGAAGAGCTCTATCCCAGAGTTGAAAAAGAAGGCCAAGGATTTCAACTCGAAAACATTTGCATGTTGGAATGAGGGCGAACGGGTTCCATTTTTGTTTCTGTGTTTGGGGTTTGATATGATTTCGGAGGAGTCTAGTAGGATTACTATCACCGATATCGTCTGCAACATGTTGAGGACCGTCATGGATACTACACCCGACGACTTGGTAGCCACTGTGTATCTTTTGGCGAATAAGATTGCTCCCGCGCACGAAGGGCTCGAGTTGGGTATTGGGGATGCTTCTATTATCAAAGCTCTTTCTGAGGCATTTGGGAGGACAGAGGCACAGGTTAAAAAACAGTACAAGGAATTGGGAGATTTAGGTCTTGTTGCCAAAGCGAGCCGTTCGTCACAATCCATGATGCGAAAGCCTGATGCTTTAACTATTACCAAAGTATTTGACTCATTTCGGCTGATCGCTAAGGAATCTGGCAAGGATAGTCAGGAGAAGAAAAAGAACCATATCAAGTCACTGCTTGTTGCTGCCACTGACTGCGAACCTTTGTATCTGATTAGATTGCTGCAGACAAAATTGCGAATTGGACTTGCTGAGCAGACTCTTTTAGCTGCATTAGGGCAAGCAGCTGTATATGCTGAAAAACATTCAACACCCCCAGCGAACGTTCAATCTCCTCTAGAAGAGGGTGCTAAGATTGTAAAGCAGGTGTATTCTGTGCTCCCTGTTTATGATAAACTTGTCCCTGCGCTTCTTAATGGTGGTGTGTGGAACCTTTCAAAAACATGCAACTTTACACCGGGAATTCCAATTGGACCTATGTTGGCAAAACCAACAAAGGGAGTCTCCGAGATCTTAAATAAATTCCAGGGTTTGGAATTTACTTGTGAATACAAATATGATGGGGAACGTGCCCAGATTCATTACATGGAAGATGGTTCAGTTGAGATCTACAGTCGAAATGCTGAACGGAACACTGGAAAGTTCCCTGATGTTGTTCTCACGGTATCAAGGATAAAGAAACCATCTGTAAGATCGTTTATTTTGGATTGTGAACTTGTTGCTTATGATCGTGGAAAACAGAAGATTTTGCCTTTTCAGATTCTGAGTACACGAGCTCGCAAGAACGTGGCCGTGAGCGATATTAAGGTTGAAGTGTGTGTATTTGCTTTTGATTTACTCTATCTTGATGGTCAACCACTTATTCAGAAAGAACTTAGTGTTCGTCGAGAGCATCTCTATGATTCATTTATTGAAGAAGCTGGATATTTTCAATTTGCCACAGCAATAACAACAAGCGATCTTGAGGAAATACAAAAATTCCTTGATGCATCTGTTGATCAAAGTTGTGAGGGTTTAATCATCAAAACATTGAACCGGGATGCTACTTACGAGCCTTCCAAGAGGTCACTTAACTGGCTAAAACTGAAGAAGGATTACATAGACAACATAGGGGATTCACTTGATCTGGTACCAATTGCTGCTTTCCATGGCCGTGGGAAGCGTACAGGTGTCTATGGCGCATTTCTCCTTGCCTGTTATGACAATGACAATGAAGAATTTCAAAGTATTTGTAAGATTGGAACTGGTTTTTCTGAAGCAATGCTTGAGGAACGTTCTGCTAGTCTCCGTTCTAAAGTCATTCCAGAACCAAAGGTTTGGGAGGTTAAAGCGGCAGACTTGACTATCAGCCCAGTTCATCGTGCAGGAGTCGGCATCGTGGATTCCAACAAGGGAATTTCTCTTCGGTTTCCACGTCTTGTTCGTGTAAGGAAAGACAAAACTCCAGAGGAGGCCACATTGTCTGAGCAGGTTGCCGACATGTATAATGCTCAGAAACTCAACCACCAAAACAATCAAGATGACAATGATGAAGACTGA | 2358 | 43.51 | MLPLRSCYCLRPITLVHPQFKKLIFSNKPPSVKPIFKNFVSAMSSRPSAFDALMSGARAAAKKKPVNSSPKKRKALDSLDPPPKSNSSLALESTPPVESQCGSSTSTLDNHGYPNLVKSEEAVDLGETKLRQDDGGNFGGKIGPVANKKCASSVQERTAKLKSSIPELKKKAKDFNSKTFACWNEGERVPFLFLCLGFDMISEESSRITITDIVCNMLRTVMDTTPDDLVATVYLLANKIAPAHEGLELGIGDASIIKALSEAFGRTEAQVKKQYKELGDLGLVAKASRSSQSMMRKPDALTITKVFDSFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAALGQAAVYAEKHSTPPANVQSPLEEGAKIVKQVYSVLPVYDKLVPALLNGGVWNLSKTCNFTPGIPIGPMLAKPTKGVSEILNKFQGLEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVLTVSRIKKPSVRSFILDCELVAYDRGKQKILPFQILSTRARKNVAVSDIKVEVCVFAFDLLYLDGQPLIQKELSVRREHLYDSFIEEAGYFQFATAITTSDLEEIQKFLDASVDQSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKVWEVKAADLTISPVHRAGVGIVDSNKGISLRFPRLVRVRKDKTPEEATLSEQVADMYNAQKLNHQNNQDDNDED | 785 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 6079287 | 6088343 | + | Cp4.1LG16g04990.1 | Cpe16g00505 | 482880 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe16g00505 | 785 | CDD | OBF_DNA_ligase_I | 644 | 770 | - | - | |
Cpe16g00505 | 785 | Pfam | DNA ligase N terminus | 190 | 365 | IPR012308 | GO:0003677|GO:0003910|GO:0006281|GO:0006310 | |
Cpe16g00505 | 785 | PANTHER | DNA LIGASE 1/3 FAMILY MEMBER | 47 | 785 | - | - | |
Cpe16g00505 | 785 | Gene3D | DNA ligase/mRNA capping enzyme | 461 | 586 | - | - | |
Cpe16g00505 | 785 | Gene3D | - | 167 | 434 | IPR036599 | GO:0003677|GO:0003910|GO:0006281|GO:0006310 | |
Cpe16g00505 | 785 | TIGRFAM | dnl1: DNA ligase I, ATP-dependent (dnl1) | 248 | 768 | IPR000977 | GO:0003910|GO:0005524|GO:0071897 | |
Cpe16g00505 | 785 | ProSitePatterns | ATP-dependent DNA ligase AMP-binding site. | 456 | 464 | IPR016059 | GO:0003909 | |
Cpe16g00505 | 785 | MobiDBLite | consensus disorder prediction | 81 | 113 | - | - | |
Cpe16g00505 | 785 | Pfam | ATP dependent DNA ligase C terminal region | 661 | 753 | IPR012309 | GO:0003910|GO:0006281|GO:0006310 | |
Cpe16g00505 | 785 | PANTHER | DNA LIGASE 1 | 47 | 785 | - | - | |
Cpe16g00505 | 785 | ProSitePatterns | ATP-dependent DNA ligase signature 2. | 610 | 636 | IPR016059 | GO:0003909 | |
Cpe16g00505 | 785 | Gene3D | - | 641 | 784 | IPR012340 | - | |
Cpe16g00505 | 785 | CDD | Adenylation_DNA_ligase_I_Euk | 421 | 639 | - | - | |
Cpe16g00505 | 785 | Pfam | ATP dependent DNA ligase domain | 432 | 636 | IPR012310 | GO:0003910|GO:0005524|GO:0006281|GO:0006310 | |
Cpe16g00505 | 785 | SUPERFAMILY | ATP-dependent DNA ligase DNA-binding domain | 172 | 423 | IPR036599 | GO:0003677|GO:0003910|GO:0006281|GO:0006310 | |
Cpe16g00505 | 785 | Gene3D | - | 442 | 640 | - | - | |
Cpe16g00505 | 785 | MobiDBLite | consensus disorder prediction | 60 | 114 | - | - | |
Cpe16g00505 | 785 | SUPERFAMILY | Nucleic acid-binding proteins | 644 | 771 | IPR012340 | - | |
Cpe16g00505 | 785 | SUPERFAMILY | DNA ligase/mRNA capping enzyme, catalytic domain | 424 | 642 | - | - | |
Cpe16g00505 | 785 | ProSiteProfiles | ATP-dependent DNA ligase family profile. | 538 | 674 | IPR012310 | GO:0003910|GO:0005524|GO:0006281|GO:0006310 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe11g00613 | Cpe-Chr11:3868206 | Cpe16g00505 | Cpe-Chr16:6079287 | 1.58E-23 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe16g00505 | K10747 | - | csv:101213447 | 1365.52 |