Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00505 ATGCTTCCTCTGCGTTCATGCTACTGTTTACGCCCCATTACATTGGTTCATCCTCAATTCAAGAAACTCATCTTCTCCAACAAACCTCCCTCTGTCAAACCCATTTTTAAGAATTTTGTTTCAGCAATGTCTTCTCGTCCTTCTGCTTTCGATGCTCTCATGTCCGGTGCTCGGGCCGCTGCCAAGAAGAAGCCTGTAAATTCTTCTCCCAAGAAGCGTAAAGCCCTAGATTCTTTAGACCCTCCTCCGAAATCTAACTCTTCCCTGGCTTTGGAGTCAACGCCGCCTGTTGAATCGCAGTGCGGTAGTTCAACCTCAACTTTGGATAATCATGGATATCCTAATCTGGTTAAGTCCGAGGAAGCTGTAGATTTGGGGGAAACCAAGTTGCGTCAGGATGATGGTGGGAATTTTGGAGGCAAGATTGGGCCGGTTGCGAATAAGAAGTGCGCGTCTAGTGTTCAAGAAAGAACTGCGAAATTGAAGAGCTCTATCCCAGAGTTGAAAAAGAAGGCCAAGGATTTCAACTCGAAAACATTTGCATGTTGGAATGAGGGCGAACGGGTTCCATTTTTGTTTCTGTGTTTGGGGTTTGATATGATTTCGGAGGAGTCTAGTAGGATTACTATCACCGATATCGTCTGCAACATGTTGAGGACCGTCATGGATACTACACCCGACGACTTGGTAGCCACTGTGTATCTTTTGGCGAATAAGATTGCTCCCGCGCACGAAGGGCTCGAGTTGGGTATTGGGGATGCTTCTATTATCAAAGCTCTTTCTGAGGCATTTGGGAGGACAGAGGCACAGGTTAAAAAACAGTACAAGGAATTGGGAGATTTAGGTCTTGTTGCCAAAGCGAGCCGTTCGTCACAATCCATGATGCGAAAGCCTGATGCTTTAACTATTACCAAAGTATTTGACTCATTTCGGCTGATCGCTAAGGAATCTGGCAAGGATAGTCAGGAGAAGAAAAAGAACCATATCAAGTCACTGCTTGTTGCTGCCACTGACTGCGAACCTTTGTATCTGATTAGATTGCTGCAGACAAAATTGCGAATTGGACTTGCTGAGCAGACTCTTTTAGCTGCATTAGGGCAAGCAGCTGTATATGCTGAAAAACATTCAACACCCCCAGCGAACGTTCAATCTCCTCTAGAAGAGGGTGCTAAGATTGTAAAGCAGGTGTATTCTGTGCTCCCTGTTTATGATAAACTTGTCCCTGCGCTTCTTAATGGTGGTGTGTGGAACCTTTCAAAAACATGCAACTTTACACCGGGAATTCCAATTGGACCTATGTTGGCAAAACCAACAAAGGGAGTCTCCGAGATCTTAAATAAATTCCAGGGTTTGGAATTTACTTGTGAATACAAATATGATGGGGAACGTGCCCAGATTCATTACATGGAAGATGGTTCAGTTGAGATCTACAGTCGAAATGCTGAACGGAACACTGGAAAGTTCCCTGATGTTGTTCTCACGGTATCAAGGATAAAGAAACCATCTGTAAGATCGTTTATTTTGGATTGTGAACTTGTTGCTTATGATCGTGGAAAACAGAAGATTTTGCCTTTTCAGATTCTGAGTACACGAGCTCGCAAGAACGTGGCCGTGAGCGATATTAAGGTTGAAGTGTGTGTATTTGCTTTTGATTTACTCTATCTTGATGGTCAACCACTTATTCAGAAAGAACTTAGTGTTCGTCGAGAGCATCTCTATGATTCATTTATTGAAGAAGCTGGATATTTTCAATTTGCCACAGCAATAACAACAAGCGATCTTGAGGAAATACAAAAATTCCTTGATGCATCTGTTGATCAAAGTTGTGAGGGTTTAATCATCAAAACATTGAACCGGGATGCTACTTACGAGCCTTCCAAGAGGTCACTTAACTGGCTAAAACTGAAGAAGGATTACATAGACAACATAGGGGATTCACTTGATCTGGTACCAATTGCTGCTTTCCATGGCCGTGGGAAGCGTACAGGTGTCTATGGCGCATTTCTCCTTGCCTGTTATGACAATGACAATGAAGAATTTCAAAGTATTTGTAAGATTGGAACTGGTTTTTCTGAAGCAATGCTTGAGGAACGTTCTGCTAGTCTCCGTTCTAAAGTCATTCCAGAACCAAAGGTTTGGGAGGTTAAAGCGGCAGACTTGACTATCAGCCCAGTTCATCGTGCAGGAGTCGGCATCGTGGATTCCAACAAGGGAATTTCTCTTCGGTTTCCACGTCTTGTTCGTGTAAGGAAAGACAAAACTCCAGAGGAGGCCACATTGTCTGAGCAGGTTGCCGACATGTATAATGCTCAGAAACTCAACCACCAAAACAATCAAGATGACAATGATGAAGACTGA 2358 43.51 MLPLRSCYCLRPITLVHPQFKKLIFSNKPPSVKPIFKNFVSAMSSRPSAFDALMSGARAAAKKKPVNSSPKKRKALDSLDPPPKSNSSLALESTPPVESQCGSSTSTLDNHGYPNLVKSEEAVDLGETKLRQDDGGNFGGKIGPVANKKCASSVQERTAKLKSSIPELKKKAKDFNSKTFACWNEGERVPFLFLCLGFDMISEESSRITITDIVCNMLRTVMDTTPDDLVATVYLLANKIAPAHEGLELGIGDASIIKALSEAFGRTEAQVKKQYKELGDLGLVAKASRSSQSMMRKPDALTITKVFDSFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAALGQAAVYAEKHSTPPANVQSPLEEGAKIVKQVYSVLPVYDKLVPALLNGGVWNLSKTCNFTPGIPIGPMLAKPTKGVSEILNKFQGLEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVLTVSRIKKPSVRSFILDCELVAYDRGKQKILPFQILSTRARKNVAVSDIKVEVCVFAFDLLYLDGQPLIQKELSVRREHLYDSFIEEAGYFQFATAITTSDLEEIQKFLDASVDQSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKVWEVKAADLTISPVHRAGVGIVDSNKGISLRFPRLVRVRKDKTPEEATLSEQVADMYNAQKLNHQNNQDDNDED 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6079287 6088343 + Cp4.1LG16g04990.1 Cpe16g00505 482880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00505 785 CDD OBF_DNA_ligase_I 644 770 - -
Cpe16g00505 785 Pfam DNA ligase N terminus 190 365 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Cpe16g00505 785 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 47 785 - -
Cpe16g00505 785 Gene3D DNA ligase/mRNA capping enzyme 461 586 - -
Cpe16g00505 785 Gene3D - 167 434 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Cpe16g00505 785 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 248 768 IPR000977 GO:0003910|GO:0005524|GO:0071897
Cpe16g00505 785 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 456 464 IPR016059 GO:0003909
Cpe16g00505 785 MobiDBLite consensus disorder prediction 81 113 - -
Cpe16g00505 785 Pfam ATP dependent DNA ligase C terminal region 661 753 IPR012309 GO:0003910|GO:0006281|GO:0006310
Cpe16g00505 785 PANTHER DNA LIGASE 1 47 785 - -
Cpe16g00505 785 ProSitePatterns ATP-dependent DNA ligase signature 2. 610 636 IPR016059 GO:0003909
Cpe16g00505 785 Gene3D - 641 784 IPR012340 -
Cpe16g00505 785 CDD Adenylation_DNA_ligase_I_Euk 421 639 - -
Cpe16g00505 785 Pfam ATP dependent DNA ligase domain 432 636 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Cpe16g00505 785 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 172 423 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Cpe16g00505 785 Gene3D - 442 640 - -
Cpe16g00505 785 MobiDBLite consensus disorder prediction 60 114 - -
Cpe16g00505 785 SUPERFAMILY Nucleic acid-binding proteins 644 771 IPR012340 -
Cpe16g00505 785 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 424 642 - -
Cpe16g00505 785 ProSiteProfiles ATP-dependent DNA ligase family profile. 538 674 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00613 Cpe-Chr11:3868206 Cpe16g00505 Cpe-Chr16:6079287 1.58E-23 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00505 K10747 - csv:101213447 1365.52