Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00530 ATGGGCATTCAAATGAAAGAAGCAGAGAAAAGCTTAGATCCTCAACTATGGCATGCCTGTGCGGGAGGCATGGTCCAGATGCCTGCAATTAACTCCAAGGTTTTCTACTTCCCTCAGGGCCACGCCGAGCACGCTCAGGCCACCGTCGATTTCACCTCCTCACTCAGAATCCCGCCTCTTATTCTTTGTCGAGTGCTCGCTGTTAAGTTCTTGGCTGACCCTGAAACGGATGAAGTTTTTGCTAATGTAAGTTTGGTTCCACTGGCGAATAACGACCTCAATTTCGAGGAAGAGGGGGGTTTTGGGAGTAATGGATCGGATAATAACATGGAGAAGCCGGCTTCCTTTGCCAAGACGTTGACCCAATCCGATGCTAACAACGGCGGTGGATTCTCGGTTCCGAGGTACTGTGCGGAGACGATATTTCCGCGACTGGATTACACGGCGGATCCACCGGTTCAGACGGTGATTGCTAAGGATGTTCACGGTGAGGTTTGGAAGTTCCGGCATATTTACAGGGGAACACCTCGCCGGCATTTATTAACTACTGGGTGGAGTAGTTTTGTGAATCAGAAAAAGCTCGTCGCCGGCGATTCTATTGTTTTTCTAAGATCCAAAAATGGCGACCTCTGCGTCGGAATCCGGCGAGCCAAACGGGCAATTGGGTGTGCCGCCGATCACCCATATGGCTGGAATCCCGGCGGTGGAAATTGTTTCCCCCCATGTGGTGGATTGACGATGTTTCTGAGAGACGAAGACAACAACAAGTTGAGTAGAAAAGGGTCTGTAAGTTCCAGTGGCGGCGGTGGGAATTTGAGGGGAAAAAGCAAAATAAGGCCGGAATCAGTGATCGAAGCAGCGGCGCTTGCGGCGAGTGGGCAGCCATTTGAGGTGGTTTATTACCCTCGTGCCAGTACGCCGGAGTTCTGTGTCAAGGCCTCATCGGTGCGAGCTGCCATGAGGATCCAATGGTGCTCTGGTATGAGATTCAAAATGCCATTTGAAACAGAGGATTCTTCTCGAATCAGTTGGTTCATGGGAACCACTTCCTCTGTTCAAGTAGCTGACCCAATCCGTTGGCCTAATTCTCCATGGCGGCTCCTCCAGGTGACATGGGATGAGCCAGATTTGCTGCAAAATGTGAAGCGGGTTAGCCCGTGGTTAGTCGAGCTCGTATCGAACATGCCCGTCATTCAACTATCACCATTCTCGTCGCCGAGAAAGAAGTTTCGACTGCCACAGCACCCAGACGTTCCTCTCGACAGCCAATTCCCGCTGTCGTCGTCATCGTCGTCGTTTTCGAGCAATACCCTTAGGCCAAGCAGTCCCATGTGTTGTTTATCTGATAACACTTCTGTAGGCATACAGGGAGCCAGGCATACTCACTTTGGAATATCTTTATCAGATTTCCATCTCAACAACAAACTGCAATTGGGGCTGGTTCCATCCAGTTTTCAGCAGCTTCATTTTCACTCTAGAATTTCCAATACAGACCATACTCGGAGCTCATCGGCGTTGCTTAACGGGGAAAAGACCGGTCCGAAATTGGAACGATCCGATTCGGCGAAGAAGAAGCATCAGTTTGTACTCTTTGGTCAGCCTATACTTACTGAACAGCAAATCTGTTGCAGCTCTTCTAGTGACATTCATCAAGTTTCTCCAAACAAGTCAGACACGGAACTCGGCCTAGACATCGGTCACTGCAAGGTATTCATGGAGTCGGAAGACGTGGGTCGAACGCTCAACCTTTCAGTCATCGGCTCGTACGAAGAACTATACAGGAGGCTAGCCAACATGTTTGGAATGGAAAAACCAGACATTCTTAGCCATGTCTTGTATCAAGATGCAACAGGTGCTGTGAAACAAGCTGGAGACAAACCATTCAGTGATTTCATCAAAACAGCTCGAAGACTAACGATTTTAACAGACGAATCGGGTTCCGACAAGATGGGAAGAAGGACATTGATGGATGGCGTCCTAAGTGGTGAGAATGGACGACTAGATGCCTCAAACAAGACTGGTCCCTTGAGCATATTGGCCTAG 2043 49.34 MGIQMKEAEKSLDPQLWHACAGGMVQMPAINSKVFYFPQGHAEHAQATVDFTSSLRIPPLILCRVLAVKFLADPETDEVFANVSLVPLANNDLNFEEEGGFGSNGSDNNMEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRSKNGDLCVGIRRAKRAIGCAADHPYGWNPGGGNCFPPCGGLTMFLRDEDNNKLSRKGSVSSSGGGGNLRGKSKIRPESVIEAAALAASGQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTTSSVQVADPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIQLSPFSSPRKKFRLPQHPDVPLDSQFPLSSSSSSFSSNTLRPSSPMCCLSDNTSVGIQGARHTHFGISLSDFHLNNKLQLGLVPSSFQQLHFHSRISNTDHTRSSSALLNGEKTGPKLERSDSAKKKHQFVLFGQPILTEQQICCSSSSDIHQVSPNKSDTELGLDIGHCKVFMESEDVGRTLNLSVIGSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDESGSDKMGRRTLMDGVLSGENGRLDASNKTGPLSILA 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6226242 6229146 + Cp4.1LG16g05330.1 Cpe16g00530 482905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00530 680 Gene3D - 324 397 - -
Cpe16g00530 680 Gene3D - 565 649 - -
Cpe16g00530 680 ProSiteProfiles B3 DNA-binding domain profile. 116 218 IPR003340 GO:0003677
Cpe16g00530 680 MobiDBLite consensus disorder prediction 256 276 - -
Cpe16g00530 680 Gene3D - 114 218 IPR015300 -
Cpe16g00530 680 Pfam B3 DNA binding domain 116 217 IPR003340 GO:0003677
Cpe16g00530 680 SUPERFAMILY DNA-binding pseudobarrel domain 112 220 IPR015300 -
Cpe16g00530 680 MobiDBLite consensus disorder prediction 499 519 - -
Cpe16g00530 680 CDD B3_DNA 115 216 IPR003340 GO:0003677
Cpe16g00530 680 SMART B3_2 116 218 IPR003340 GO:0003677
Cpe16g00530 680 PANTHER AUXIN RESPONSE FACTOR 561 654 - -
Cpe16g00530 680 PANTHER AUXIN RESPONSE FACTOR 6 552 - -
Cpe16g00530 680 Pfam Auxin response factor 286 369 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cpe16g00530 680 ProSiteProfiles PB1 domain profile. 565 645 IPR000270 GO:0005515
Cpe16g00530 680 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 561 654 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe16g00530 680 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 552 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00530 Cpe-Chr16:6226242 Cpe18g00939 Cpe-Chr18:8268551 2.55E-78 dispersed
Cpe01g02236 Cpe-Chr1:19019574 Cpe16g00530 Cpe-Chr16:6226242 0 wgd
Cpe10g00219 Cpe-Chr10:1241922 Cpe16g00530 Cpe-Chr16:6226242 0 wgd
Cpe13g00800 Cpe-Chr13:7188933 Cpe16g00530 Cpe-Chr16:6226242 0 wgd
Cpe16g00530 Cpe-Chr16:6226242 Cpe19g00413 Cpe-Chr19:3647403 0 wgd
Cpe16g00530 Cpe-Chr16:6226242 Cpe05g00816 Cpe-Chr5:5047352 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50722 PF02362 B3 6.60E-22 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00530 - - bhj:120088819 1181.78