Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00533 ATGGCTATGGCTATAGCTCATCACAGGGAGAGTAGTAGTGGGAGCATAACCAGGCATCTTGACAGTACTGGGAAGTACGTTCGATACACATCAGAGCAGGTGGAAGCTCTTGAGCGAGTCTATGCTGAGTGCCCGAAACCAAGTTCTCTTCGACGGCAGCAGCTCGTCCGGGAGTGCCCAATTCTTTCCAACATAGAGCCTAAGCAGATCAAAGTTTGGTTTCAGAATCGCAGATGTAGGGAGAAGCAAAGGAAGGAGGCTTCTCGGCTGCAAACAGTGAACAGGAAATTAAATGCTATGAACAAGTTGTTGATGGAGGAGAATGATCGGCTTCAGAAACAAGTTTCACAATTGGTGTGTGAAAATGGGTTTATGCGGCAGCAATTGCAAACAGTGCCAGCAGCAGCAACTACCGATGCAAGCTGCGATTCTGTGGTCACCACTCCTCAGCCCTCTCGACGAGATGCTAATAACGCAGCTGGACTCCTTTCCATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGGTTCAGATGCCTGGGATGAAGATTGCCGAGATCCTTAAAGATCGTCCATCGTGGTTTCGTGATTGTCGGAGCCTCGAGGTTTTTACCATGTTTCCAGCTGGAAACGGTGGGACAATTGAACTTGTTTACACACAGGTGTATGCTCCAACTACCCTTGCTCCTGCACGTGATTTTTGGACGCTAAGATACACAACAACTTTAGAAAATGGCAGCCTTGTGGTTTGCGAGAGATCACTCTCTGGTTCTGGTGCTGGTCCTAGTGCAGCAGCTGCTGCTCAGTTTGTGAGAGCTGAGATGCTCCCAAGTGGTTACCTGATTCGACCATGTGAGGGTGGTGGATCCATCATACATATTGTTGATCACCTAAATCTTGAGGCATGGAATGTTCCTGAGGTGTTGCGACCACTTTATGAATCATCAAAAGTAGTGGCTCAGAAGATGACTATAGCAGCATTGCGGTACATTAGGCAAATAGCTCAGGAGACAAGTGGTGAAGTGGTTTATGGTCTGGGCCGGCAACCTGCTGTTTTGCGAACTTTTAGCCAAAGATTGAGCAGGGGTTTCAATGATGCAGTGAATGGATTTAATGACAACGGATGGTCATTGATTAATTGTGAAGGTGCTGAGGATGTGGTACTTGCTGTGAATTCTACGAAAAATTTTGGCACAACATCGAACCCTGCTAACTCCTTGACTTATCCTGGGGGTGTTCTTTGTGCAAAGGCATCCATGCTACTCCAAAATGTTTCTCCTGCTGTGTTAGTTCGTTTCTTGAGAGAACATCGCTCAGAGTGGGCTGATTTCAACATTGATGCGTACTCTGCGGCAACCCTTAAAGCCAATTCATACGCATATCCTGGGATGAGACCCACGAGGTTTACTGGTAGCCAAATCATCATGCCACTTGGTCACACAATCGAGAATGAAGAGTTGCTTGAAGTAATTCGACTTGAGGGACATCCTATGGTACAAGAAGATGCTTTTGTTTCGAGGGACATTCATCTTCTTCAGATATGTAGTGGAATTGACGAGAATGCTGTAGGAGCCTGTTCAGAACTCATTTTTGCACCTATTGATGAGATGTTTCCAGACGACGCCCCGTTGCTGCCTTCTGGCTTTCGAATCATCCCATTGGATTCCAGATCAGTTGATTTCCAACTGGGATCGGAGTTGATCAGGTCGGATTTGTTGGAAACTGATTCCGTGTTGAAAAATCTCTGGAATCATCAGGATGCAATATTGTGCTGTTCGCTTAAGCAGGCACTGCCTGTTTTCCTGTTTGCAAACCAATCTGGTCTTGACATGTTGGAGACAACTCTAGTAGCCTTACAAGACATCACATTGGATAAGATCTTTGACGAGTCTGGTCGCAAAGCTCTGTGTTCTGATTTCCCAAAGTTAATGCAGCAGGGATTTGCATACTTGCCTGGTGGAATATGTGCATCGACCATGGGGCGACACGTTTCATACGAACAAGCCATTGCGTGGAAAGTCCTTGAGGCAGACGAGACGACGGTCCATTGCCTTGCCTTCTCATTCATCAATTGGTCCTTTGTTTGA 2112 46.54 MAMAIAHHRESSSGSITRHLDSTGKYVRYTSEQVEALERVYAECPKPSSLRRQQLVRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQVSQLVCENGFMRQQLQTVPAAATTDASCDSVVTTPQPSRRDANNAAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQVYAPTTLAPARDFWTLRYTTTLENGSLVVCERSLSGSGAGPSAAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWNVPEVLRPLYESSKVVAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDNGWSLINCEGAEDVVLAVNSTKNFGTTSNPANSLTYPGGVLCAKASMLLQNVSPAVLVRFLREHRSEWADFNIDAYSAATLKANSYAYPGMRPTRFTGSQIIMPLGHTIENEELLEVIRLEGHPMVQEDAFVSRDIHLLQICSGIDENAVGACSELIFAPIDEMFPDDAPLLPSGFRIIPLDSRSVDFQLGSELIRSDLLETDSVLKNLWNHQDAILCCSLKQALPVFLFANQSGLDMLETTLVALQDITLDKIFDESGRKALCSDFPKLMQQGFAYLPGGICASTMGRHVSYEQAIAWKVLEADETTVHCLAFSFINWSFV 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6249568 6255430 - Cp4.1LG16g05410.1 Cpe16g00533 482908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00533 703 Pfam MEKHLA domain 566 702 IPR013978 -
Cpe16g00533 703 Pfam START domain 193 340 IPR002913 GO:0008289
Cpe16g00533 703 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 565 703 IPR044830 GO:0003700
Cpe16g00533 703 SUPERFAMILY Homeodomain-like 23 87 IPR009057 -
Cpe16g00533 703 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677
Cpe16g00533 703 ProSiteProfiles START domain profile. 159 351 IPR002913 GO:0008289
Cpe16g00533 703 Gene3D - 177 348 IPR023393 -
Cpe16g00533 703 Pfam Homeodomain 26 83 IPR001356 GO:0003677
Cpe16g00533 703 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 191 IPR044830 GO:0003700
Cpe16g00533 703 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 191 566 IPR044830 GO:0003700
Cpe16g00533 703 SUPERFAMILY Bet v1-like 164 344 - -
Cpe16g00533 703 Gene3D - 19 91 - -
Cpe16g00533 703 CDD bZIP 77 116 - -
Cpe16g00533 703 SMART START_1 131 342 IPR002913 GO:0008289
Cpe16g00533 703 SMART HOX_1 22 88 IPR001356 GO:0003677
Cpe16g00533 703 CDD homeodomain 25 85 IPR001356 GO:0003677
Cpe16g00533 703 Coils Coil 80 121 - -
Cpe16g00533 703 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 565 703 - -
Cpe16g00533 703 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 191 566 - -
Cpe16g00533 703 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00669 Cpe-Chr7:5380729 Cpe16g00533 Cpe-Chr16:6249568 5.84E-21 dispersed
Cpe10g00053 Cpe-Chr10:353954 Cpe16g00533 Cpe-Chr16:6249568 2.26E-15 dispersed
Cpe16g00533 Cpe-Chr16:6249568 Cpe19g01171 Cpe-Chr19:7886271 0 dispersed
Cpe16g00533 Cpe-Chr16:6249568 Cpe05g00818 Cpe-Chr5:5072409 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50723 PF01852 START 6.40E-33 CL0209 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00533 K09338 - csv:101215773 1076.62