Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00547 ATGGAAATTGATCTGAACCAAACAGCCAGTGAGGAGGGGAAGAATGCATATTGCCATGGAAATTGTGAAGAGGGTCGCTGCAATTGCTGTTTATCATCTTCAACTTCTTCTTGTTCCTCAAATTCTTCATCAACTCCCGCCTCTTCTTCAACCTATTTGGAGCTTTGGCATGCTTGTGCTGGTCCTCTCACCTCATTGCCCAAGAAAGGAAATGCAGTTGTCTATTTCCCACAAGGTCACTTGGAGCAAATTGCCTCTGCCTCTCCCTTTTCCCCCATGGAAATGGCCACTTTTGACCTCCAGCCCCAGATCCTCTGCAGGGTCATCAATGTCCACCTACTTGCTAATAAGGAGAATGATGAGGTCTACACACAACTTACTCTGCTTCCCTTGCCAGAGTTATTAGGCACTGGCGTAGAGGGCAAAGAGCTGGAGGAATTGGCGTTGAATAGAGCTGCTGATGGAGATGGGAGCGGAGGGTCGCCTACTAGATCCACACCTCACATGTTCTGTAAAACACTCACAGCGTCCGACACGAGCACCCATGGAGGATTCTCTGTTCCTCGCAGAGCTGCTGAAGACTGTTTCCCTCCTCTGGATTATACTCAGCTTAGGCCATCTCAAGAGCTAATAGCCAAGGACCTGCATGGCGTGGAGTGGAGATTTAAGCATATTTACAGAGGTATATTGGGCGAAAATGGAGAGTTAAGGTTGGGAATAAGACGAGCTGTTCGGCCTAGAAATGGTCTTCCTGATTCAATTGTGGGCAACCAAAATTCTTGTGCAAATGATCTTACTCGTGTGGTGAAAGCAGTTTCCACCAAGAGCACGTTTGATGTGTTTTACAATCCAAGGGCATATCATGCACAATTTGTTGTCTCTTGTCAGAAGTATGTGAAGAGCATCAACAATCCAGTGAACGTAGGCACAAGATTCAAAATGAGATTTGAGATGGACGATTCGCCAGAAAGAAGGTTTAATGGTGTAGTTGTCGGTATTGGCGACATGGATCCCTTTCGATGGCCGAACTCGAAATGGAGATGCTTAACGGTCCGATGGGATAAAGACAGTGATCATCAAGAACGCGTTTCGCCCTGGGAGATTGATCCTTCTGTTTCTCTCCCACCCTTGAGTGTTCAGTCTTCTCCAAGGCTGAAGAAACTGAGGACTAGTCTGCAGGCAGCCCCACCTAATAACGCCTTTAATGGGAGGGGCGGTTTTATGGACTTTGAGGATTCAGTTAGATCCTCTAAGGTCTTGCAAGGTCAAGAAAATGTAGGTATGGTATCACCCTTTTACGGTTGTGATAATACCGCAAAACGCTCACTGGAGTTTGAGGTGCGATCTTCTGCACAACAAAATCAAGCGTCAGGTGGAGTTGAAAAGCTTAATATAGGTGATTATGTAACTTCTTTCACAGGCTTTATGGAATCTGATAGATTTCTGAAGGTCTTGCAAGGTCAAGAAATATGCTCATTGAGGCCACAAACAAGAAAACCAGAGCCTAGTTTAGGTGTTTGGGGAAAGTTCAATCTCAGTGACAACTCTTTTAACCCATTTCAATCACCGAACTCGAGTTTTTATCACATGATGTCAAATGGCGCCCGAAACATGCATTACCCTCGTCGTGATATTTACAGTACTGGCCAAGCTGCCATGATGAGCTCAAATGATATCAATTTTCCAAGAGAGAGTGCCTTGTTCAACCCATCAGCAAAAATGGAAAGGGCTAATTCTACTCCTCCAACTTTAGGGTCGACTATGAGGAATTCAAAGGACGAAAACGTTCACAAACAAGGCAGCCTAGTAGGAAGAGCTATTGATCTCTCTAGACTGAATGGTTACACTGATCTTCTTTCTGAACTCGAACGCCTGTTTAGCATGGAAGGACTCTTAAAAGATCCCGATAAAGGATGGCGTGTATTGTACACCGACAACGAGAACGACGTAATGGTGGTCGGGGACTATCCATGGCATGATTTCTGTGATGCTGTTTCGAAAATCCACATATACACAGAAGAAGAAGTGGAAAAGATGACAAATGGAGTGATCAGTGATGATACTCAAAGCTGCTTAGATCAAGCTGCTTTGTGTATGGAAGCATCAAAATCGTCTTCAGTGGGTCAACCTGATTCATCTCCAACAGTAGTAAGAGTTTAA 2160 44.81 MEIDLNQTASEEGKNAYCHGNCEEGRCNCCLSSSTSSCSSNSSSTPASSSTYLELWHACAGPLTSLPKKGNAVVYFPQGHLEQIASASPFSPMEMATFDLQPQILCRVINVHLLANKENDEVYTQLTLLPLPELLGTGVEGKELEELALNRAADGDGSGGSPTRSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYTQLRPSQELIAKDLHGVEWRFKHIYRGILGENGELRLGIRRAVRPRNGLPDSIVGNQNSCANDLTRVVKAVSTKSTFDVFYNPRAYHAQFVVSCQKYVKSINNPVNVGTRFKMRFEMDDSPERRFNGVVVGIGDMDPFRWPNSKWRCLTVRWDKDSDHQERVSPWEIDPSVSLPPLSVQSSPRLKKLRTSLQAAPPNNAFNGRGGFMDFEDSVRSSKVLQGQENVGMVSPFYGCDNTAKRSLEFEVRSSAQQNQASGGVEKLNIGDYVTSFTGFMESDRFLKVLQGQEICSLRPQTRKPEPSLGVWGKFNLSDNSFNPFQSPNSSFYHMMSNGARNMHYPRRDIYSTGQAAMMSSNDINFPRESALFNPSAKMERANSTPPTLGSTMRNSKDENVHKQGSLVGRAIDLSRLNGYTDLLSELERLFSMEGLLKDPDKGWRVLYTDNENDVMVVGDYPWHDFCDAVSKIHIYTEEEVEKMTNGVISDDTQSCLDQAALCMEASKSSSVGQPDSSPTVVRV 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6316397 6322147 + Cp4.1LG16g05510.1 Cpe16g00547 482922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00547 719 Pfam AUX/IAA family 639 676 IPR033389 -
Cpe16g00547 719 Gene3D - 306 375 - -
Cpe16g00547 719 PANTHER AUXIN RESPONSE FACTOR 594 707 - -
Cpe16g00547 719 PANTHER AUXIN RESPONSE FACTOR 28 228 - -
Cpe16g00547 719 PANTHER AUXIN RESPONSE FACTOR 231 572 - -
Cpe16g00547 719 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 231 572 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe16g00547 719 ProSiteProfiles PB1 domain profile. 591 673 IPR000270 GO:0005515
Cpe16g00547 719 Pfam Auxin response factor 269 349 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cpe16g00547 719 MobiDBLite consensus disorder prediction 572 590 - -
Cpe16g00547 719 Gene3D - 589 680 - -
Cpe16g00547 719 Gene3D - 168 239 IPR015300 -
Cpe16g00547 719 SUPERFAMILY DNA-binding pseudobarrel domain 164 228 IPR015300 -
Cpe16g00547 719 CDD B3_DNA 168 228 IPR003340 GO:0003677
Cpe16g00547 719 MobiDBLite consensus disorder prediction 572 592 - -
Cpe16g00547 719 SMART B3_2 170 244 IPR003340 GO:0003677
Cpe16g00547 719 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 594 707 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe16g00547 719 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 28 228 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe16g00547 719 SUPERFAMILY CAD & PB1 domains 595 669 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00168 Cpe-Chr10:1007566 Cpe16g00547 Cpe-Chr16:6316397 9.65E-118 dispersed
Cpe16g00547 Cpe-Chr16:6316397 Cpe19g01041 Cpe-Chr19:7200777 1.29E-128 dispersed
Cpe01g02387 Cpe-Chr1:19949331 Cpe16g00547 Cpe-Chr16:6316397 4.03E-24 transposed
Cpe16g00547 Cpe-Chr16:6316397 Cpe05g00832 Cpe-Chr5:5149587 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00547 - - cmo:103501935 1242.25