Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe16g00549 | ATGGGAAAAGAGAAGACTCACATCAACATTGTGGTCATTGGCCATGTCGACTCTGGGAAGTCTACCACCACCGGACACTTGATCTACAAGCTTGGTGGTATCGACAAGCGTGTTATTGAAAGGTTCGAGAAAGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATATGCCTGGGTGTTGGACAAACTCAAGGCTGAGCGTGAACGTGGTATCACCATCGATATTGCTTTGTGGAAGTTCGAGACCACCAAATACTACTGCACCGTTATTGATGCCCCTGGACATCGTGATTTCATTAAGAACATGATTACTGGTACCTCACAGGCGGATTGCGCTGTTCTCATTATTGATTCCACTACTGGTGGTTTTGAAGCCGGTATTTCGAAGGATGGGCAAACCCGTGAGCATGCTTTGCTTGCGTTTACTCTTGGTGTCAAGCAGATGATCTGCTGCTGCAACAAGATGGATGCCACCACCCCCAAGTACTCCAAGGCAAGGTATGACGAAATTGTGAAGGAAGTTTCGTCCTACCTCAAGAAGGTTGGATACAACCCTGACAAAATCCCATTCGTCCCCATCTCTGGTTTCGAAGGAGACAACATGATTGAGAGGTCAACAAACCTCGACTGGTACAAGGGTCCAACCCTCCTCGAGGCTCTTGACTTGATCCAGGAGCCCAAGAGGCCCTCGGACAAGCCACTCCGTCTTCCACTCCAGGATGTGTACAAGATTGGTGGTATTGGCACTGTACCTGTTGGACGTGTTGAGACTGGTGTACTCAAGCCTGGTATGGTCGTCACTTTTGGCCCATCTGGATTGACCACTGAAGTTAAGTCTGTGGAGATGCACCATGAAGCTCTCCCAGAGGCTCTTCCCGGCGACAATGTCGGATTCAATGTGAAGAATGTTGCTGTCAAGGATCTCAAGCGTGGTTTCGTTGCTTCCAATTCAAAGGATGATCCTGCCAGGGAGGCTGCCAACTTCACATCTCAGGTCATTATCATGAACCACCCAGGGCAGATTGGCAATGGTTATGCTCCAGTGCTGGATTGCCACACCTCTCACATTGCCGTGAAGTTCGCTGAGATTCTGACCAAGATCGACAGGCGATCTGGTAAAGAACTTGAGAAGGAGCCCAAGTTCTTGAAAAATGGTGATGCGGGTATGATTAAGATGGTTCCCACCAAGCCCATGGTGGTGGAAACCTTCTCCCAGTACCCACCTCTTGGACGTTTTGCTGTGAGGGACATGAGACAGACCGTGGCTGTGGGAGTCATCAAGTCGGTCGAGAAGAAGGATCCAAGTGGTGCCAAGGTTACCAAGTCCGCAGTGAAGAAGGGTGGAAAGTGA | 1350 | 49.41 | MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALPEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMIKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAVKKGGK | 449 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 6326649 | 6329316 | - | Cp4.1LG16g05600.1 | Cpe16g00549 | 482924 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe16g00549 | 449 | PANTHER | TRANSLATION FACTOR | 1 | 447 | - | - | |
Cpe16g00549 | 449 | Gene3D | Translation factors | 323 | 430 | - | - | |
Cpe16g00549 | 449 | Hamap | Elongation factor Tu [tuf]. | 2 | 432 | IPR004539 | GO:0003746|GO:0005525|GO:0006414 | |
Cpe16g00549 | 449 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 326 | 429 | IPR009001 | - | |
Cpe16g00549 | 449 | CDD | EF1_alpha_II | 230 | 320 | - | - | |
Cpe16g00549 | 449 | PANTHER | ELONGATION FACTOR 1-ALPHA-LIKE | 1 | 447 | - | - | |
Cpe16g00549 | 449 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 3 | 249 | IPR027417 | - | |
Cpe16g00549 | 449 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 5 | 230 | IPR000795 | GO:0003924|GO:0005525 | |
Cpe16g00549 | 449 | Pfam | Elongation factor Tu C-terminal domain | 322 | 429 | IPR004160 | - | |
Cpe16g00549 | 449 | Gene3D | Translation factors | 229 | 316 | - | - | |
Cpe16g00549 | 449 | SUPERFAMILY | Translation proteins | 231 | 321 | IPR009000 | - | |
Cpe16g00549 | 449 | TIGRFAM | EF-1_alpha: translation elongation factor EF-1, subunit alpha | 1 | 433 | IPR004539 | GO:0003746|GO:0005525|GO:0006414 | |
Cpe16g00549 | 449 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 61 | 76 | IPR031157 | - | |
Cpe16g00549 | 449 | CDD | EF1_alpha_III | 323 | 426 | - | - | |
Cpe16g00549 | 449 | Pfam | Elongation factor Tu domain 2 | 248 | 313 | IPR004161 | GO:0005525 | |
Cpe16g00549 | 449 | CDD | EF1_alpha | 9 | 227 | - | - | |
Cpe16g00549 | 449 | Pfam | Elongation factor Tu GTP binding domain | 5 | 221 | IPR000795 | GO:0003924|GO:0005525 | |
Cpe16g00549 | 449 | Gene3D | - | 1 | 226 | IPR027417 | - | |
Cpe16g00549 | 449 | PRINTS | GTP-binding elongation factor signature | 9 | 22 | IPR000795 | GO:0003924|GO:0005525 | |
Cpe16g00549 | 449 | PRINTS | GTP-binding elongation factor signature | 68 | 76 | IPR000795 | GO:0003924|GO:0005525 | |
Cpe16g00549 | 449 | PRINTS | GTP-binding elongation factor signature | 88 | 98 | IPR000795 | GO:0003924|GO:0005525 | |
Cpe16g00549 | 449 | PRINTS | GTP-binding elongation factor signature | 104 | 115 | IPR000795 | GO:0003924|GO:0005525 | |
Cpe16g00549 | 449 | PRINTS | GTP-binding elongation factor signature | 148 | 157 | IPR000795 | GO:0003924|GO:0005525 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe09g01124 | Cpe-Chr9:9658470 | Cpe16g00549 | Cpe-Chr16:6326649 | 1.42E-92 | dispersed | |
Cpe12g00091 | Cpe-Chr12:541178 | Cpe16g00549 | Cpe-Chr16:6326649 | 0 | dispersed | |
Cpe16g00549 | Cpe-Chr16:6326649 | Cpe17g00257 | Cpe-Chr17:1686638 | 0 | dispersed | |
Cpe06g00386 | Cpe-Chr6:2186739 | Cpe16g00549 | Cpe-Chr16:6326649 | 2.45E-93 | transposed | |
Cpe13g00816 | Cpe-Chr13:7275231 | Cpe16g00549 | Cpe-Chr16:6326649 | 0 | wgd | |
Cpe16g00549 | Cpe-Chr16:6326649 | Cpe05g00861 | Cpe-Chr5:5660508 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe16g00549 | K03231 | - | csv:101213221 | 900.197 |