Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00549 ATGGGAAAAGAGAAGACTCACATCAACATTGTGGTCATTGGCCATGTCGACTCTGGGAAGTCTACCACCACCGGACACTTGATCTACAAGCTTGGTGGTATCGACAAGCGTGTTATTGAAAGGTTCGAGAAAGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATATGCCTGGGTGTTGGACAAACTCAAGGCTGAGCGTGAACGTGGTATCACCATCGATATTGCTTTGTGGAAGTTCGAGACCACCAAATACTACTGCACCGTTATTGATGCCCCTGGACATCGTGATTTCATTAAGAACATGATTACTGGTACCTCACAGGCGGATTGCGCTGTTCTCATTATTGATTCCACTACTGGTGGTTTTGAAGCCGGTATTTCGAAGGATGGGCAAACCCGTGAGCATGCTTTGCTTGCGTTTACTCTTGGTGTCAAGCAGATGATCTGCTGCTGCAACAAGATGGATGCCACCACCCCCAAGTACTCCAAGGCAAGGTATGACGAAATTGTGAAGGAAGTTTCGTCCTACCTCAAGAAGGTTGGATACAACCCTGACAAAATCCCATTCGTCCCCATCTCTGGTTTCGAAGGAGACAACATGATTGAGAGGTCAACAAACCTCGACTGGTACAAGGGTCCAACCCTCCTCGAGGCTCTTGACTTGATCCAGGAGCCCAAGAGGCCCTCGGACAAGCCACTCCGTCTTCCACTCCAGGATGTGTACAAGATTGGTGGTATTGGCACTGTACCTGTTGGACGTGTTGAGACTGGTGTACTCAAGCCTGGTATGGTCGTCACTTTTGGCCCATCTGGATTGACCACTGAAGTTAAGTCTGTGGAGATGCACCATGAAGCTCTCCCAGAGGCTCTTCCCGGCGACAATGTCGGATTCAATGTGAAGAATGTTGCTGTCAAGGATCTCAAGCGTGGTTTCGTTGCTTCCAATTCAAAGGATGATCCTGCCAGGGAGGCTGCCAACTTCACATCTCAGGTCATTATCATGAACCACCCAGGGCAGATTGGCAATGGTTATGCTCCAGTGCTGGATTGCCACACCTCTCACATTGCCGTGAAGTTCGCTGAGATTCTGACCAAGATCGACAGGCGATCTGGTAAAGAACTTGAGAAGGAGCCCAAGTTCTTGAAAAATGGTGATGCGGGTATGATTAAGATGGTTCCCACCAAGCCCATGGTGGTGGAAACCTTCTCCCAGTACCCACCTCTTGGACGTTTTGCTGTGAGGGACATGAGACAGACCGTGGCTGTGGGAGTCATCAAGTCGGTCGAGAAGAAGGATCCAAGTGGTGCCAAGGTTACCAAGTCCGCAGTGAAGAAGGGTGGAAAGTGA 1350 49.41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALPEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMIKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAVKKGGK 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6326649 6329316 - Cp4.1LG16g05600.1 Cpe16g00549 482924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00549 449 PANTHER TRANSLATION FACTOR 1 447 - -
Cpe16g00549 449 Gene3D Translation factors 323 430 - -
Cpe16g00549 449 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746|GO:0005525|GO:0006414
Cpe16g00549 449 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Cpe16g00549 449 CDD EF1_alpha_II 230 320 - -
Cpe16g00549 449 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 447 - -
Cpe16g00549 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Cpe16g00549 449 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Cpe16g00549 449 Pfam Elongation factor Tu C-terminal domain 322 429 IPR004160 -
Cpe16g00549 449 Gene3D Translation factors 229 316 - -
Cpe16g00549 449 SUPERFAMILY Translation proteins 231 321 IPR009000 -
Cpe16g00549 449 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 433 IPR004539 GO:0003746|GO:0005525|GO:0006414
Cpe16g00549 449 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Cpe16g00549 449 CDD EF1_alpha_III 323 426 - -
Cpe16g00549 449 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525
Cpe16g00549 449 CDD EF1_alpha 9 227 - -
Cpe16g00549 449 Pfam Elongation factor Tu GTP binding domain 5 221 IPR000795 GO:0003924|GO:0005525
Cpe16g00549 449 Gene3D - 1 226 IPR027417 -
Cpe16g00549 449 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Cpe16g00549 449 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Cpe16g00549 449 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Cpe16g00549 449 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Cpe16g00549 449 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01124 Cpe-Chr9:9658470 Cpe16g00549 Cpe-Chr16:6326649 1.42E-92 dispersed
Cpe12g00091 Cpe-Chr12:541178 Cpe16g00549 Cpe-Chr16:6326649 0 dispersed
Cpe16g00549 Cpe-Chr16:6326649 Cpe17g00257 Cpe-Chr17:1686638 0 dispersed
Cpe06g00386 Cpe-Chr6:2186739 Cpe16g00549 Cpe-Chr16:6326649 2.45E-93 transposed
Cpe13g00816 Cpe-Chr13:7275231 Cpe16g00549 Cpe-Chr16:6326649 0 wgd
Cpe16g00549 Cpe-Chr16:6326649 Cpe05g00861 Cpe-Chr5:5660508 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00549 K03231 - csv:101213221 900.197