Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00556 ATGGAAGGCAGTGATTCAATCATCACTCTTTCATCAACTCCTCCATCTCCATCTCCTTCCTCTTCTTCTTCTCCGGCACCACCGCCGCCTGTCGTTCTCAGTCCATGTGCGGCCTGCAAGATTTTGAGGCGGCGATGTGCTGAGGGATGTGTATTGGCGCCCTATTTTCCTCCCACTGAACCGGCGAAGTTCGCCATCGCTCATCGTGTTTTTGGCGCTAGCAATATCATCAAATTCTTGCAGGAACTGCCTGAATCTCAAAGAGCAGATGCAGTGAGCAGCTTGGTTTATGAAGCGAGTGCGAGGATCAGAGATCCTGTTTACGGATCAGCAGGTGCCATTTGCCAACTCCAAAAGCAAGTCAATGAGCTTCAAGCACAGCTAGCCAAGGCCCAAGCAGAAGTCGTCAACATGCAATGCCAACAAGCCAATCTCGTGGCCTTCGTTTGCAGGGAATTAGCTCAATCTCATCAGTCTTCTTTTGATGATTTGAATGCCGACTCTCACAGTGGCTTATTCCAGAGCATCAGCAGCCCAAGCTACTTTGATGATACCAATGTAAACCCACTGTGGGAACCTCTCTGGACATGA 591 49.58 MEGSDSIITLSSTPPSPSPSSSSSPAPPPPVVLSPCAACKILRRRCAEGCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSSFDDLNADSHSGLFQSISSPSYFDDTNVNPLWEPLWT 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6368390 6370111 - Cp4.1LG16g05610.1 Cpe16g00556 482931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00556 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 15 193 - -
Cpe16g00556 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 15 193 - -
Cpe16g00556 196 Coils Coil 114 141 - -
Cpe16g00556 196 MobiDBLite consensus disorder prediction 1 17 - -
Cpe16g00556 196 Pfam Lateral organ boundaries (LOB) domain 35 132 IPR004883 -
Cpe16g00556 196 ProSiteProfiles LOB domain profile. 34 135 IPR004883 -
Cpe16g00556 196 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00556 Cpe-Chr16:6368390 Cpe20g00754 Cpe-Chr20:6701146 8.20E-75 dispersed
Cpe19g00663 Cpe-Chr19:5304244 Cpe16g00556 Cpe-Chr16:6368390 1.52E-10 dispersed
Cpe01g01139 Cpe-Chr1:6773070 Cpe16g00556 Cpe-Chr16:6368390 4.61E-75 wgd
Cpe01g00236 Cpe-Chr1:1342584 Cpe16g00556 Cpe-Chr16:6368390 6.15E-76 wgd
Cpe13g00820 Cpe-Chr13:7303134 Cpe16g00556 Cpe-Chr16:6368390 1.04E-62 wgd
Cpe16g00556 Cpe-Chr16:6368390 Cpe02g01297 Cpe-Chr2:11546733 4.99E-37 wgd
Cpe16g00556 Cpe-Chr16:6368390 Cpe02g01297 Cpe-Chr2:11546733 4.99E-37 wgd
Cpe16g00556 Cpe-Chr16:6368390 Cpe05g00866 Cpe-Chr5:5685489 1.43E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50725 PF03195 LOB 2.50E-41 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00556 - - csv:101215067 296.589