Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00562 ATGGACGACTTCTTAGACAATATACCGTCCATGGATCTGATGCGTTCCGAGAAGATGACTTTTGTTCAGCTTATTATCCCCGTTGAGTCCGCTCATCGAGCCATTTCGTACCTTGGCGAGCTTGGCATCCTTCAATTTAGAGATTTAAACGTGGACAAAAGTCCTTTCCAGAGAACCTTTGTTAACCAGGTAAAGCGATGTGCAGAGATGTCAAGGAAGTTACGATTTTTCAAAGATCAAATCAGTAAAGCTGGTGTACTGGCATCTACACGCCCAATTCTTCAAGAACATATTGAGCTAGAGAATTTAGAGATACGACTAGCTGATCATGAGCATGAGCTGATTGAAATGAACTCAAACAGCGAGAAACTTCAACAGTCATATAATGAACTATTAGAATTCAAGATGGTATTGCAAAAGGCAAGCGTCTTTCTGGTGTCCAGTAATAGCCATTCAGTTTCAGAAGAAAGGGAGTTGAATGAAAATGTTTTCTTGAATGATAACTATACCGAGGATGGATCATTACTTGAACAGGAAATGAGACCTGGACCATCCAGCCAACCTGGTTTGAGATTTATTTGTGGAATTATTTGTAAATCCAAAGTTCTCAGATTTGAAAGGATGCTGTTTCGTGCAACAAGGGGAAATATGCTTTTCAACCAGGCACCAGCAGATGTACAGATCATGGATCCCATATCTATGGAAATGGTTGAGAAAACAGTATTTGTAGTGTTTTTCTCTGGGGAGCAGGCCAGAAATAAAGTTTTGAAGATCTGTGAGGCTTTTGGAGCAAATTGCTATCCTGTTCCTGAAGATATAACCAAACAAAGGCAGATAACTAGAGAAGTTTCATCACGCCTCACTGAACTTGAAGCTACTTTAGATGCTGGGATCCGTCACCGAAATGAGGCTCTTGCATCAATAGGATTTCACTTGATTAAATGGATGAATATGGTAAGAAGGGAAAAGGCTGTATATGACACATTGAATATGTTGAATTTTGATGTCACTAAAAAATGTCTCGTTGGAGAAGGCTGGTGCCCAATCTTTGCAAAATCTCAGATTCAGGAAGCTCTGCAACGAGCAACATTTGATAGCAGTTCACAAGTGGGGATAATATTTCATGTGATGGATACGTTTGTCCATGACAGCAAGTGCGATGATGTGCCAGTGTTGTATCGATGCAATGTTGCTAGATATCAAGAAGCAAATCCTGCAGTTTACACTGTTATTACATTTCCGTTCCTATTCGCAGTGATGTTTGGGGATTGGGGTCATGGAATATGTTTGTTGCTTGGAGCTTTATTTCTTATAGCTCGTGAAAGTAAGCTCAATAATCAGAAATTAGGAAGCTTTATGGAGATGCTATTTGGTGGACGCTATGTTCTTCTTTTGATGTCACTTTTTTCAATTTATTGTGGGTTGATCTACAATGAGTTCTTCTCTGTTCCGTATCATATATTCGGCGCGTCTGCCTACAAGTGTAGAGATATCACATGCAGTGATGTACACACTGTTGGGTTAGTTAAATACCGCGATGCCTATCCATTTGGTGTTGACCCAAGTTGGCGCGGAAGTCGTTCAGAACTTCCTTTTCTGAACTCTCTTAAAATGAAGTTATCTATCTTGTTGGGTATTGCCCAAATGAACTTAGGGATCATATTGAGTTACTTTAATGCACGCTTTACTGGAAGCTCACTCGATATCAGGTACCAGTTTGTACCACAAGTGATTTTTCTTAACAGCCTTTTCGGATATCTATCTCTTCTCATTGTCATCAAGTGGTGCACTGGATCTCAAGCAGACCTCTATCATGTGATGATTTACATGTTTTTAAGCCCATTTGATGATCTTGGTGAGAACGAATTGTTTTGGGGCCAAAGACCACTTCAAATTATCTTGTTGATGTTGGCTATAGTTGCAGTGCCTTGGATGCTTTTCCCTAAACCCTTTATTTTGAAAAAGATTCACACAGAGAGATTTCAAGGTCGTACTTATGGGATGCTTGGAACCTCTGAGATGGATCTTGAAGTGGAACCTGATTCGGCAAGGCAACACCAAGAGGATTTCAATTTTAGTGAGATCTTTGTTCACCAAATGATTCACTCCATAGAATTCGTCTTGGGTGCAGTTTCAAATACAGCGTCGTATCTCCGACTTTGGGCTTTAAGCTTGGCGCACTCAGAACTGTCAACAGTTTTCTACGAGAAAGTACTCCTCCTAGCTTGGGGGTATGACAGCTTTGTCATTCGGCTGATTGGATTAGCTGTTTTTTCGTTTGCCACTGCTTTCATACTTCTCATGATGGAGACCCTTAGTGCCTTCCTTCATGCCTTACGTCTCCATTGGGTTGAGTTTCAAAATAAGTTCTACCATGGTGATGGCTACAAGTTCAAACCTTTCTCCTTCGCCTCCATCGACGAGGACGAAGATTAA 2436 40.68 MDDFLDNIPSMDLMRSEKMTFVQLIIPVESAHRAISYLGELGILQFRDLNVDKSPFQRTFVNQVKRCAEMSRKLRFFKDQISKAGVLASTRPILQEHIELENLEIRLADHEHELIEMNSNSEKLQQSYNELLEFKMVLQKASVFLVSSNSHSVSEERELNENVFLNDNYTEDGSLLEQEMRPGPSSQPGLRFICGIICKSKVLRFERMLFRATRGNMLFNQAPADVQIMDPISMEMVEKTVFVVFFSGEQARNKVLKICEAFGANCYPVPEDITKQRQITREVSSRLTELEATLDAGIRHRNEALASIGFHLIKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKSQIQEALQRATFDSSSQVGIIFHVMDTFVHDSKCDDVPVLYRCNVARYQEANPAVYTVITFPFLFAVMFGDWGHGICLLLGALFLIARESKLNNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGASAYKCRDITCSDVHTVGLVKYRDAYPFGVDPSWRGSRSELPFLNSLKMKLSILLGIAQMNLGIILSYFNARFTGSSLDIRYQFVPQVIFLNSLFGYLSLLIVIKWCTGSQADLYHVMIYMFLSPFDDLGENELFWGQRPLQIILLMLAIVAVPWMLFPKPFILKKIHTERFQGRTYGMLGTSEMDLEVEPDSARQHQEDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDSFVIRLIGLAVFSFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFKPFSFASIDEDED 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6414568 6424280 + Cp4.1LG16g05660.1 Cpe16g00562 482937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00562 811 PANTHER VACUOLAR PROTON ATPASES 5 811 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cpe16g00562 811 PIRSF ATP6V0A1 9 811 IPR026028 GO:0000220|GO:0046961
Cpe16g00562 811 PANTHER VACUOLAR PROTON ATPASE A1 5 811 - -
Cpe16g00562 811 Pfam V-type ATPase 116kDa subunit family 37 803 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cpe16g00562 811 Coils Coil 93 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00112 Cpe-Chr4:997971 Cpe16g00562 Cpe-Chr16:6414568 0 dispersed
Cpe07g00387 Cpe-Chr7:2501426 Cpe16g00562 Cpe-Chr16:6414568 0 dispersed
Cpe11g00231 Cpe-Chr11:1241860 Cpe16g00562 Cpe-Chr16:6414568 5.57E-25 dispersed
Cpe15g00555 Cpe-Chr15:6387031 Cpe16g00562 Cpe-Chr16:6414568 0 dispersed
Cpe16g00562 Cpe-Chr16:6414568 Cpe05g00871 Cpe-Chr5:5717217 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00562 K02154 - csv:101216514 1534.62