Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00565 ATGTTTGATCTTAATCTCAATGTCGACTCGCCTGATGCGACGCCGAATGAGGACTCTGTCCTGTTCTTTGAGAAGCTTCCTCAAGGCTCGGGGAATCAAATGGATGAATCAGGAACTTCCAATTCTTCGATTGTCAATGCGGATACCTCCAGCAATGGCGGCGATGACGACTCGTGCTCCACACGCGCCGGTGGCGAGCTCTTCATGATCAACTTCGGGATATTGAAGTCTGGAAGCGCGAACGACGTTGTCACGAAGGAGCTTTTTCCAATAGGTGGAACGGTGAATCCTGACTTTGGGATTCTTCAGGGGCATAACTCTGCCTCTTCTTCGTCAAATTCATCGAGGAAGAACTGGATCAACCTTGCGTTTGATCGAAGCGGATCAGCAGGGGAGGGGAGAATGATTCAACCGGTTCAGCCTCAGCCGGCGAAGAAGAGCAGGAGGGGACCGAGGTCTCGGAGCTCGCAGTACAGAGGCGTCACATTCTACCGGAGGACTGGGCGGTGGGAATCTCATATTTGGGACTGTGGGAAGCAAGTCTATCTCGGTGGATTTGACACAGCACATTCAGCGGCGAGAGCATATGATCGAGCTGCTATCAAGTTCAGAGGGGTCGACGCTGACATTAATTTCATCCTTAGTGATTATGAGGAAGATCTGAAACAGATGAAGAATTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGCCAAAGCACTGGTTTCTCAAGAGGGAGCTCAAAATACAGAGGGGTTACACTGCACAAATGTGGCCGATGGGAAGCTAGAATGGGGCAGCTCCTTGGGAAAAAGTATATATATCTCGGGCTATTCGACAGCGAGGTAGAAGCTGCAAGGGCTTATGATAAGGCTGCCATCCAATGTAATGGGCGGGAGGCAGTGACCAACTTTGAGCCTAGCACGTACGGAGAAAGGGTTTCTGAGGGCAGCAGTGAAGGTACATTGCATACACTTATGTTGTCGGATCATGCTTGA 999 49.95 MFDLNLNVDSPDATPNEDSVLFFEKLPQGSGNQMDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFMINFGILKSGSANDVVTKELFPIGGTVNPDFGILQGHNSASSSSNSSRKNWINLAFDRSGSAGEGRMIQPVQPQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFILSDYEEDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAAIQCNGREAVTNFEPSTYGERVSEGSSEGTLHTLMLSDHA 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6443669 6448057 + Cp4.1LG16g05630.1 Cpe16g00565 482940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00565 332 SUPERFAMILY DNA-binding domain 248 307 IPR016177 GO:0003677
Cpe16g00565 332 CDD AP2 157 212 IPR001471 GO:0003700|GO:0006355
Cpe16g00565 332 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 316 - -
Cpe16g00565 332 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 316 - -
Cpe16g00565 332 MobiDBLite consensus disorder prediction 27 58 - -
Cpe16g00565 332 ProSiteProfiles AP2/ERF domain profile. 249 306 IPR001471 GO:0003700|GO:0006355
Cpe16g00565 332 SMART rav1_2 249 312 IPR001471 GO:0003700|GO:0006355
Cpe16g00565 332 SMART rav1_2 157 219 IPR001471 GO:0003700|GO:0006355
Cpe16g00565 332 CDD AP2 248 308 IPR001471 GO:0003700|GO:0006355
Cpe16g00565 332 MobiDBLite consensus disorder prediction 130 158 - -
Cpe16g00565 332 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700|GO:0006355
Cpe16g00565 332 MobiDBLite consensus disorder prediction 30 58 - -
Cpe16g00565 332 SUPERFAMILY DNA-binding domain 156 213 IPR016177 GO:0003677
Cpe16g00565 332 PRINTS Ethylene responsive element binding protein signature 250 261 IPR001471 GO:0003700|GO:0006355
Cpe16g00565 332 PRINTS Ethylene responsive element binding protein signature 288 308 IPR001471 GO:0003700|GO:0006355
Cpe16g00565 332 Pfam AP2 domain 248 296 IPR001471 GO:0003700|GO:0006355
Cpe16g00565 332 Pfam AP2 domain 157 205 IPR001471 GO:0003700|GO:0006355
Cpe16g00565 332 Gene3D AP2/ERF domain 156 214 IPR036955 GO:0003700|GO:0006355
Cpe16g00565 332 Gene3D AP2/ERF domain 248 307 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01156 Cpe-Chr5:7851229 Cpe16g00565 Cpe-Chr16:6443669 6.03E-102 dispersed
Cpe10g00444 Cpe-Chr10:2595462 Cpe16g00565 Cpe-Chr16:6443669 2.78E-103 dispersed
Cpe16g00565 Cpe-Chr16:6443669 Cpe19g00630 Cpe-Chr19:5121137 4.58E-78 dispersed
Cpe01g01135 Cpe-Chr1:6736665 Cpe16g00565 Cpe-Chr16:6443669 9.67E-10 wgd
Cpe01g00229 Cpe-Chr1:1301560 Cpe16g00565 Cpe-Chr16:6443669 1.56E-09 wgd
Cpe16g00565 Cpe-Chr16:6443669 Cpe19g00398 Cpe-Chr19:3551661 3.15E-97 wgd
Cpe16g00565 Cpe-Chr16:6443669 Cpe03g00153 Cpe-Chr3:770883 7.81E-104 wgd
Cpe16g00565 Cpe-Chr16:6443669 Cpe05g00875 Cpe-Chr5:5758181 0 wgd
Cpe16g00565 Cpe-Chr16:6443669 Cpe08g01126 Cpe-Chr8:8455417 1.07E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50727 PF00847 AP2 2.90E-09 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00565 K09284 - csv:101222024 594.349