Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe16g00565 | ATGTTTGATCTTAATCTCAATGTCGACTCGCCTGATGCGACGCCGAATGAGGACTCTGTCCTGTTCTTTGAGAAGCTTCCTCAAGGCTCGGGGAATCAAATGGATGAATCAGGAACTTCCAATTCTTCGATTGTCAATGCGGATACCTCCAGCAATGGCGGCGATGACGACTCGTGCTCCACACGCGCCGGTGGCGAGCTCTTCATGATCAACTTCGGGATATTGAAGTCTGGAAGCGCGAACGACGTTGTCACGAAGGAGCTTTTTCCAATAGGTGGAACGGTGAATCCTGACTTTGGGATTCTTCAGGGGCATAACTCTGCCTCTTCTTCGTCAAATTCATCGAGGAAGAACTGGATCAACCTTGCGTTTGATCGAAGCGGATCAGCAGGGGAGGGGAGAATGATTCAACCGGTTCAGCCTCAGCCGGCGAAGAAGAGCAGGAGGGGACCGAGGTCTCGGAGCTCGCAGTACAGAGGCGTCACATTCTACCGGAGGACTGGGCGGTGGGAATCTCATATTTGGGACTGTGGGAAGCAAGTCTATCTCGGTGGATTTGACACAGCACATTCAGCGGCGAGAGCATATGATCGAGCTGCTATCAAGTTCAGAGGGGTCGACGCTGACATTAATTTCATCCTTAGTGATTATGAGGAAGATCTGAAACAGATGAAGAATTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGCCAAAGCACTGGTTTCTCAAGAGGGAGCTCAAAATACAGAGGGGTTACACTGCACAAATGTGGCCGATGGGAAGCTAGAATGGGGCAGCTCCTTGGGAAAAAGTATATATATCTCGGGCTATTCGACAGCGAGGTAGAAGCTGCAAGGGCTTATGATAAGGCTGCCATCCAATGTAATGGGCGGGAGGCAGTGACCAACTTTGAGCCTAGCACGTACGGAGAAAGGGTTTCTGAGGGCAGCAGTGAAGGTACATTGCATACACTTATGTTGTCGGATCATGCTTGA | 999 | 49.95 | MFDLNLNVDSPDATPNEDSVLFFEKLPQGSGNQMDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFMINFGILKSGSANDVVTKELFPIGGTVNPDFGILQGHNSASSSSNSSRKNWINLAFDRSGSAGEGRMIQPVQPQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFILSDYEEDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAAIQCNGREAVTNFEPSTYGERVSEGSSEGTLHTLMLSDHA | 332 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 6443669 | 6448057 | + | Cp4.1LG16g05630.1 | Cpe16g00565 | 482940 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe16g00565 | 332 | SUPERFAMILY | DNA-binding domain | 248 | 307 | IPR016177 | GO:0003677 | |
Cpe16g00565 | 332 | CDD | AP2 | 157 | 212 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe16g00565 | 332 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 | 1 | 316 | - | - | |
Cpe16g00565 | 332 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 316 | - | - | |
Cpe16g00565 | 332 | MobiDBLite | consensus disorder prediction | 27 | 58 | - | - | |
Cpe16g00565 | 332 | ProSiteProfiles | AP2/ERF domain profile. | 249 | 306 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe16g00565 | 332 | SMART | rav1_2 | 249 | 312 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe16g00565 | 332 | SMART | rav1_2 | 157 | 219 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe16g00565 | 332 | CDD | AP2 | 248 | 308 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe16g00565 | 332 | MobiDBLite | consensus disorder prediction | 130 | 158 | - | - | |
Cpe16g00565 | 332 | ProSiteProfiles | AP2/ERF domain profile. | 157 | 213 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe16g00565 | 332 | MobiDBLite | consensus disorder prediction | 30 | 58 | - | - | |
Cpe16g00565 | 332 | SUPERFAMILY | DNA-binding domain | 156 | 213 | IPR016177 | GO:0003677 | |
Cpe16g00565 | 332 | PRINTS | Ethylene responsive element binding protein signature | 250 | 261 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe16g00565 | 332 | PRINTS | Ethylene responsive element binding protein signature | 288 | 308 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe16g00565 | 332 | Pfam | AP2 domain | 248 | 296 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe16g00565 | 332 | Pfam | AP2 domain | 157 | 205 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe16g00565 | 332 | Gene3D | AP2/ERF domain | 156 | 214 | IPR036955 | GO:0003700|GO:0006355 | |
Cpe16g00565 | 332 | Gene3D | AP2/ERF domain | 248 | 307 | IPR036955 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe05g01156 | Cpe-Chr5:7851229 | Cpe16g00565 | Cpe-Chr16:6443669 | 6.03E-102 | dispersed | |
Cpe10g00444 | Cpe-Chr10:2595462 | Cpe16g00565 | Cpe-Chr16:6443669 | 2.78E-103 | dispersed | |
Cpe16g00565 | Cpe-Chr16:6443669 | Cpe19g00630 | Cpe-Chr19:5121137 | 4.58E-78 | dispersed | |
Cpe01g01135 | Cpe-Chr1:6736665 | Cpe16g00565 | Cpe-Chr16:6443669 | 9.67E-10 | wgd | |
Cpe01g00229 | Cpe-Chr1:1301560 | Cpe16g00565 | Cpe-Chr16:6443669 | 1.56E-09 | wgd | |
Cpe16g00565 | Cpe-Chr16:6443669 | Cpe19g00398 | Cpe-Chr19:3551661 | 3.15E-97 | wgd | |
Cpe16g00565 | Cpe-Chr16:6443669 | Cpe03g00153 | Cpe-Chr3:770883 | 7.81E-104 | wgd | |
Cpe16g00565 | Cpe-Chr16:6443669 | Cpe05g00875 | Cpe-Chr5:5758181 | 0 | wgd | |
Cpe16g00565 | Cpe-Chr16:6443669 | Cpe08g01126 | Cpe-Chr8:8455417 | 1.07E-97 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50727 | PF00847 | AP2 | 2.90E-09 | CL0081 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe16g00565 | K09284 | - | csv:101222024 | 594.349 |